miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48810_osa-miR156j:pmrd
Length = 165
Score = 236 bits (119), Expect = 3e-63
Identities = 125/127 (98%)
Strand = Plus / Plus
Query: 1 gcatatgaaaggcgagattgttgacagaagagagtgagcacacggcgcggcggctagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 gcatatgaaaggcgagattgttgacagaagagagtgagcacacggcgcggcggctagcca 80
Query: 61 tcggcgggatgcctgcccccgccgtgtgctcgctcctctttctgtcagcatctctcatca 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 81 tcggcgggatgcctgcccccgccgcgtgctcgctcctctttctgtcagcatctctcatca 140
Query: 121 gtccctc 127
||||||
Sbjct: 141 ctccctc 147
>48808_osa-miR156h:pmrd
Length = 101
Score = 192 bits (97), Expect = 4e-50
Identities = 100/101 (99%)
Strand = Plus / Plus
Query: 14 gagattgttgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagattgttgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcc 60
Query: 74 tgcccccgccgtgtgctcgctcctctttctgtcagcatctc 114
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 tgcccccgccgcgtgctcgctcctctttctgtcagcatctc 101
>48813_osa-miR156m:pmrd
Length = 86
Score = 163 bits (82), Expect = 4e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccg 60
Query: 82 ccgtgtgctcgctcctctttctgtca 107
||| ||||||||||||||||||||||
Sbjct: 61 ccgcgtgctcgctcctctttctgtca 86
>54914_zma-miR156d:pmrd
Length = 119
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacacggcgcg 49
|||||||||||||||||||||||||||||
Sbjct: 15 ttgacagaagagagtgagcacacggcgcg 43
>54402_sbi-miR157:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacacggcgcg 49
|||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcg 29
>48817_osa-miR156q:pmrd
Length = 243
Score = 58.0 bits (29), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 2 catatgaaaggcg-agattgttgacagaagagagtgagcac 41
||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 203 catatgaaaggcgtagattgttgacagaacagagtgagcac 243
>54923_zma-miR156n:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggcgcg 49
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcg 28
>54397_sbi-miR156e:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 77 ccccgccgtgtgctcgctcctctttctgtcagcatctctc 116
|||||||| ||||||||| |||||||||||||| ||||||
Sbjct: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctctc 113
>54393_sbi-miR156a:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggcgcg 49
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcg 28
>48804_osa-miR156d:pmrd
Length = 129
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacacggcg 47
|||||||||||||||||||||||||||
Sbjct: 19 ttgacagaagagagtgagcacacggcg 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 80 cgccgtgtgctcgctcctctttctgtca 107
||||| |||||| |||||||||||||||
Sbjct: 76 cgccgcgtgctcactcctctttctgtca 103
>54921_zma-miR156k:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 77 ccccgccgtgtgctcgctcctctttctgtcagcatctc 114
|||||||| ||||||||| |||||||||||||| ||||
Sbjct: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctc 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacacggcgcggcg 52
|||||||||||||| |||||| |||||||||
Sbjct: 20 ttgacagaagagagcgagcacctggcgcggcg 51
>54919_zma-miR156i:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 13 tgacagaagagagtgagcacacggc 37
>54918_zma-miR156h:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>54915_zma-miR156e:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>54400_sbi-miR156h:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>54399_sbi-miR156g:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>48809_osa-miR156i:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacacggc 27
>48805_osa-miR156e:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacggc 46
|||||||||||||||||||||||||
Sbjct: 10 tgacagaagagagtgagcacacggc 34
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 20 gttgacagaagagagtgagcacac 43
||||||||||||||||||||||||
Sbjct: 95 gttgacagaagagagtgagcacac 72
>51594_ptc-miR156d:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gttgacagaagagagtgagcacac 43
||||||||||||||||||||||||
Sbjct: 9 gttgacagaagagagtgagcacac 32
>48806_osa-miR156f:pmrd
Length = 186
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gttgacagaagagagtgagcacac 43
||||||||||||||||||||||||
Sbjct: 2 gttgacagaagagagtgagcacac 25
>48491_ghr-miR156d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacacg 44
||||||||||||||||||||||||
Sbjct: 8 ttgacagaagagagtgagcacacg 31
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gttgacagaagagagtgagcacac 43
||||||||||||||||||||||||
Sbjct: 4 gttgacagaagagagtgagcacac 27
>46913_ath-miR156d:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gttgacagaagagagtgagcacac 43
||||||||||||||||||||||||
Sbjct: 16 gttgacagaagagagtgagcacac 39
>54912_zma-miR156b:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacac 43
|||||||||||||||||||||||
Sbjct: 20 ttgacagaagagagtgagcacac 42
>54656_stu-miR156a:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacg 44
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacg 23
>54569_smo-miR156a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 gacagaagagagtgagcacacgg 45
|||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacacgg 34
>51595_ptc-miR156e:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcacac 43
|||||||||||||||||||||||
Sbjct: 10 ttgacagaagagagtgagcacac 32
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacg 44
|||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacacg 29
>48801_osa-miR156a:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacg 44
|||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacacg 29
>48425_cpt-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacacg 44
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacacg 33
>54924_zma-miR156o:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54922_zma-miR156m:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54913_zma-miR156c:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
>54911_zma-miR156a:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacac 39
>54768_vvi-miR156c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>54767_vvi-miR156b:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>54758_tre-miR156:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttgacagaagagagtgagcaca 42
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 gtgtgctcgctcctctttctgtca 107
|||||||| |||||||||||||||
Sbjct: 61 gtgtgctcactcctctttctgtca 84
>54401_sbi-miR156i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>54395_sbi-miR156c:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54394_sbi-miR156b:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 8 tgacagaagagagtgagcacac 29
>51596_ptc-miR156f:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51593_ptc-miR156c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51592_ptc-miR156b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51591_ptc-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>51354_ppr-miR156:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 89 tgacagaagagagtgagcacac 68
>48807_osa-miR156g:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacac 25
>48803_osa-miR156c:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 29 tgacagaagagagtgagcacac 50
>48802_osa-miR156b:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 43 tgacagaagagagtgagcacac 64
>48795_oru-miR156:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>48652_hvv-miR156a:pmrd
Length = 394
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48489_ghr-miR156b:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>48488_ghr-miR156a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48336_bna-miR156a:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 96 tgacagaagagagtgagcacac 75
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>46915_ath-miR156f:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
>46914_ath-miR156e:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>46912_ath-miR156c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 12 tgacagaagagagtgagcacac 33
>46910_ath-miR156a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgacagaagagagtgagcacac 43
||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacac 42
