miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 1 ggtctgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggtctgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgg 34
Query: 61 gagcttggcgtgctcactct 80
||||| |||||||||||||
Sbjct: 33 gagctgtgcgtgctcactct 14
>48802_osa-miR156b:pmrd
Length = 176
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ggtctgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ggtctgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgg 98
Query: 61 gagcttggcgtgctcactct 80
||||| |||||||||||||
Sbjct: 99 gagctgtgcgtgctcactct 118
>54394_sbi-miR156b:pmrd
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgggagc 64
|||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||
Sbjct: 1 tgacagaagagagtgagcacacacggtggtttcttagcatg--agtgccatgttgggagc 58
Query: 65 ttggcgtgctcactct 80
| |||||||||||||
Sbjct: 59 tgtgcgtgctcactct 74
>54912_zma-miR156b:pmrd
Length = 124
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgggagc 64
|||||||||||||||||||||||||||| ||||||| |||| || | |||||| |||||
Sbjct: 21 tgacagaagagagtgagcacacacggtggtttcttaccatg--agtgtcatgctaggagc 78
Query: 65 ttggcgtgctcac 77
| ||||||||||
Sbjct: 79 tgtgcgtgctcac 91
>54922_zma-miR156m:pmrd
Length = 83
Score = 65.9 bits (33), Expect = 5e-12
Identities = 66/76 (86%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgggagc 64
|||||||||||||||||||||||||||| || |||| |||| || | |||||| |||||
Sbjct: 1 tgacagaagagagtgagcacacacggtggttccttaccatg--agtgtcatgctaggagc 58
Query: 65 ttggcgtgctcactct 80
| |||||||||||||
Sbjct: 59 tgtgcgtgctcactct 74
>51354_ppr-miR156:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacggtgcttt 36
|||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgacagaagagagtgagcacacatggtgcttt 33
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| ||| |||||||
Sbjct: 3 tgacagaagagagtgagcacacagggtactttctt 37
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| ||| |||||||
Sbjct: 93 tgacagaagagagtgagcacacagggtactttctt 59
>51594_ptc-miR156d:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| ||| |||||||
Sbjct: 11 tgacagaagagagtgagcacacagggtactttctt 45
>51592_ptc-miR156b:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| ||| |||||||
Sbjct: 11 tgacagaagagagtgagcacacagggtactttctt 45
>48489_ghr-miR156b:pmrd
Length = 113
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| ||| |||||||
Sbjct: 3 tgacagaagagagtgagcacacagggtactttctt 37
>48488_ghr-miR156a:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| ||| |||||||
Sbjct: 9 tgacagaagagagtgagcacacagggtactttctt 43
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| |||| ||||||
Sbjct: 96 tgacagaagagagtgagcacacatggtggtttctt 62
>46914_ath-miR156e:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgctttctt 39
||||||||||||||||||||||| |||| ||||||
Sbjct: 7 tgacagaagagagtgagcacacatggtggtttctt 41
>54913_zma-miR156c:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacggtgc 33
|||||||||||||||||||||||| |||||
Sbjct: 20 ctgacagaagagagtgagcacacatggtgc 49
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacg 29
||||||||||||||||||||||||||
Sbjct: 7 ctgacagaagagagtgagcacacacg 32
>51596_ptc-miR156f:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacg 29
||||||||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagcacacacg 35
>51591_ptc-miR156a:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacg 29
||||||||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagcacacacg 35
>54924_zma-miR156o:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgc 33
||||||||||||||||||||||| |||||
Sbjct: 1 tgacagaagagagtgagcacacatggtgc 29
>54395_sbi-miR156c:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtgc 33
||||||||||||||||||||||| |||||
Sbjct: 1 tgacagaagagagtgagcacacatggtgc 29
>48803_osa-miR156c:pmrd
Length = 149
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacggtg 32
|||||||||||||||||||||||| ||||
Sbjct: 28 ctgacagaagagagtgagcacacatggtg 56
>48795_oru-miR156:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacacacggtg 32
|||||||||||||||||||||||| ||||
Sbjct: 1 ctgacagaagagagtgagcacacatggtg 29
>54911_zma-miR156a:pmrd
Length = 152
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 17 ctgacagaagagagtgagcacaca 40
>54767_vvi-miR156b:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagcacaca 33
>54401_sbi-miR156i:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 2 ctgacagaagagagtgagcacaca 25
>51593_ptc-miR156c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagcacaca 33
>48807_osa-miR156g:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 3 ctgacagaagagagtgagcacaca 26
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtg 32
||||||||||||||||||||||| ||||
Sbjct: 3 tgacagaagagagtgagcacacatggtg 30
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtg 32
||||||||||||||||||||||| ||||
Sbjct: 3 tgacagaagagagtgagcacacatggtg 30
>46915_ath-miR156f:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacacacggtg 32
||||||||||||||||||||||| ||||
Sbjct: 21 tgacagaagagagtgagcacacatggtg 48
>46912_ath-miR156c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 11 ctgacagaagagagtgagcacaca 34
>46910_ath-miR156a:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacaca 27
||||||||||||||||||||||||
Sbjct: 20 ctgacagaagagagtgagcacaca 43
>54768_vvi-miR156c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51595_ptc-miR156e:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>48806_osa-miR156f:pmrd
Length = 186
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacaca 26
>48652_hvv-miR156a:pmrd
Length = 394
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>48425_cpt-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcacac 26
|||||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagcacac 32
>48336_bna-miR156a:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 6 tgacagaagagagtgagcacaca 28
>46913_ath-miR156d:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacaca 27
|||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacaca 40
>54923_zma-miR156n:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54919_zma-miR156i:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 13 tgacagaagagagtgagcacac 34
>54918_zma-miR156h:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>54915_zma-miR156e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>54914_zma-miR156d:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 16 tgacagaagagagtgagcacac 37
>54769_vvi-miR156d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcaca 25
||||||||||||||||||||||
Sbjct: 10 ctgacagaagagagtgagcaca 31
>54656_stu-miR156a:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54402_sbi-miR157:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54400_sbi-miR156h:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54399_sbi-miR156g:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54393_sbi-miR156a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>48813_osa-miR156m:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48810_osa-miR156j:pmrd
Length = 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 42 tgacagaagagagtgagcacac 63
>48809_osa-miR156i:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>48808_osa-miR156h:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48805_osa-miR156e:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 10 tgacagaagagagtgagcacac 31
>48804_osa-miR156d:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>48801_osa-miR156a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>48528_gma-miR156a:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcaca 25
||||||||||||||||||||||
Sbjct: 20 ctgacagaagagagtgagcaca 41
>48491_ghr-miR156d:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tgacagaagagagtgagcacac 26
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48243_ath-miRf11143-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 ctgacagaagagagtgagcaca 25
||||||||||||||||||||||
Sbjct: 91 ctgacagaagagagtgagcaca 70
>46916_ath-miR156g:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gacagaagagagtgagcacaca 27
||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacaca 33
>46911_ath-miR156b:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ctgacagaagagagtgagcaca 25
||||||||||||||||||||||
Sbjct: 46 ctgacagaagagagtgagcaca 67
