miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacgagtggataccgattttggttttaaaatcggctgccggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacgagtggataccgattttggttttaaaatcggctgccggt 64
Query: 61 ggcgtacaaggagtcaagc 79
|||||||||||||||||||
Sbjct: 65 ggcgtacaaggagtcaagc 83
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 79.8 bits (40), Expect = 5e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacgagtggataccgattttggttttaaaa-tcggctgccgg 59
||||||||||||||||||||| ||| |||| |||||||||| |||| || |||||| |
Sbjct: 5 gcctggctccctgtatgccacaagtagatattgattttggttgaaaaaatcagctgccag 64
Query: 60 tggcgtacaaggagtcaagc 79
||||||||||||||||||||
Sbjct: 65 tggcgtacaaggagtcaagc 84
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacgagtggataccgat 35
||||||||||||||||||||| ||| ||||||||
Sbjct: 5 gcctggctccctgtatgccacaagtaaataccgat 39
