miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55002_zma-miR168m:pmrd
Length = 65
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
Query: 61 agtga 65
|||||
Sbjct: 61 agtga 65
>54999_zma-miR168a:pmrd
Length = 104
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 80
Query: 61 agtga 65
|||||
Sbjct: 81 agtga 85
>54655_ssp-miR168:pmrd
Length = 65
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
Query: 61 agtga 65
|||||
Sbjct: 61 agtga 65
>54636_sof-miR168a:pmrd
Length = 104
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 80
Query: 61 agtga 65
|||||
Sbjct: 81 agtga 85
>55000_zma-miR168b:pmrd
Length = 104
Score = 121 bits (61), Expect = 6e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcatca 80
Query: 61 agtga 65
|||||
Sbjct: 81 agtga 85
>54637_sof-miR168b:pmrd
Length = 103
Score = 113 bits (57), Expect = 1e-26
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tcgcttgg-gcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 79
Query: 61 agtga 65
|||||
Sbjct: 80 agtga 84
>48661_hvv-miR168:pmrd
Length = 66
Score = 91.7 bits (46), Expect = 5e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 59
||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
Query: 60 aagtga 65
||||||
Sbjct: 61 aagtga 66
>55001_zma-miR168c:pmrd
Length = 67
Score = 77.8 bits (39), Expect = 8e-16
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggc-cgacgggacggatcccg-ccttgcac 58
||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgcgacgggacggatcccgcccttgcat 60
Query: 59 caagtga 65
|||||||
Sbjct: 61 caagtga 67
>54436_sbi-miR168:pmrd
Length = 106
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 80
Query: 59 caagtga 65
|||||||
Sbjct: 81 caagtga 87
>48875_osa-miR168m:pmrd
Length = 67
Score = 69.9 bits (35), Expect = 2e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 60
Query: 59 caagtga 65
|||||||
Sbjct: 61 caagtga 67
>48873_osa-miR168a:pmrd
Length = 87
Score = 69.9 bits (35), Expect = 2e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
Query: 59 caagtga 65
|||||||
Sbjct: 71 caagtga 77
>48872_osa-miR168a:pmrd
Length = 87
Score = 69.9 bits (35), Expect = 2e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
Query: 59 caagtga 65
|||||||
Sbjct: 71 caagtga 77
>48871_osa-miR168a:pmrd
Length = 87
Score = 69.9 bits (35), Expect = 2e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 58
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
Query: 59 caagtga 65
|||||||
Sbjct: 71 caagtga 77
