miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48528_gma-miR156a:pmrd
Length = 122
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgctagtggtatttgtatgagggcatacaattgcgggtgcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacatgctagtggtatttgtatgagggcatacaattgcgggtgcgt 83
Query: 61 gctcacttctctatctg 77
|||||||||||||||||
Sbjct: 84 gctcacttctctatctg 100
>54769_vvi-miR156d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgc 21
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacatgc 34
>51596_ptc-miR156f:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 61/73 (83%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgctagtggtatttgtatgagggcatacaattgc-gggtgcg 59
|||||||||||||||||| | | | || |||||||| |||||| ||||| ||||| |
Sbjct: 14 cagaagagagtgagcacacacgaaagctaattgtatgaaagcataccattgcagggtgtg 73
Query: 60 tgctcacttctct 72
|||||||||||||
Sbjct: 74 tgctcacttctct 86
>48243_ath-miRf11143-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 cagaagagagtgagcacatgc 21
|||||||||||||||||||||
Sbjct: 87 cagaagagagtgagcacatgc 67
>46911_ath-miR156b:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgc 21
|||||||||||||||||||||
Sbjct: 50 cagaagagagtgagcacatgc 70
>54758_tre-miR156:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatg 20
||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacatg 24
