miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 31 ttgtatgagggcatacaattgcgggtgcgtgctcacttctctatctg 77
|||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct: 32 ttgtatgaaggcatacctttgcgggtgcgtgctcacttctctttctg 78
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgctagtggtatttgtatgagggcatacaattgcgggtgcgt 60
|||||||||||||||||||||| | || |||||||| |||||||||| |||||||
Sbjct: 5 cagaagagagtgagcacatgct-gcagtgattgtatgatagcatacaattcttggtgcgt 63
Query: 61 gctcacttctctatctg 77
|||||||||||| ||||
Sbjct: 64 gctcacttctctttctg 80
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tgcgtgctcacttctctatctg 77
||||||||||||||||||||||
Sbjct: 63 tgcgtgctcacttctctatctg 84
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgc 21
|||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacatgc 25
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacatgc 21
|||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacatgc 25
