miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 125 bits (63), Expect = 1e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacccggcgtgatggccggcctaaaatctatccggtcctcgc 70
||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgtgatggccggcataaaatctatcccgtcctcgc 60
Query: 71 cggctgctcactcctctttctgt 93
|| |||||||||||||||||||
Sbjct: 61 cgcgtgctcactcctctttctgt 83
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacccggcgtgatggccggcctaaaatctatccggtcctcgc 70
||||||||||||||||||||| ||||| || | |||| ||| || ||| ||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgc 60
Query: 71 cggctgctcactcctctttctgt 93
|| |||||||| ||||||||||
Sbjct: 61 cgcgtgctcacttctctttctgt 83
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacccggcg 37
|||||||||||||| ||||||||||||
Sbjct: 1 ttgacagaagagagcgagcacccggcg 27
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacccggcg 37
||||||||||||||||||||| |||||
Sbjct: 1 ttgacagaagagagtgagcacacggcg 27
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcaccc 33
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcaccc 23
