miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 125 bits (63), Expect = 2e-28
Identities = 147/176 (83%), Gaps = 13/176 (7%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
Query: 61 ttcaaatattgagtccaaaaatttcaaatctcaaatggatt---cactaaacgattgaat 117
| |||||| ||||| || | ||| |||| || |||| || |||||
Sbjct: 72 tccaaatactgagttaaagga----------caaggagattacccagtaaatgagtgaat 121
Query: 118 gatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctcc 173
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 122 gatgcgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctcc 177
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 123 bits (62), Expect = 8e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
Query: 61 ttcaaatattgagt 74
| |||||| |||||
Sbjct: 73 tccaaatactgagt 86
Score = 121 bits (61), Expect = 3e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 209
Query: 173 c 173
|
Sbjct: 210 c 210
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 105 bits (53), Expect = 2e-22
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 121 tgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctc 180
Query: 173 c 173
|
Sbjct: 181 c 181
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 105 taaacgattgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaa 164
|||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct: 102 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 161
Query: 165 gggagctcc 173
|||||||||
Sbjct: 162 gggagctcc 170
Score = 89.7 bits (45), Expect = 1e-17
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgact-cattc 59
||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 60 attcaaata 68
|| ||||||
Sbjct: 73 atccaaata 81
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 101 bits (51), Expect = 3e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 99 attcactaaacgattgaatgatgcgggagacaaattgaatcttaagcttcctgtacttgg 158
||||| |||| || ||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 91 attcagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattgg 150
Query: 159 actgaagggagctcc 173
|||||||||||||||
Sbjct: 151 actgaagggagctcc 165
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||||||||||||||| |||||||||| || | | |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcattca 72
Query: 61 ttcaaat 67
| |||||
Sbjct: 73 tccaaat 79
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 75.8 bits (38), Expect = 2e-13
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggag-acaaattgaatcttaagcttcctgtacttggactgaagggagct 171
||||||| ||||||| |||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 108 tgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagct 167
Query: 172 cc 173
||
Sbjct: 168 cc 169
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||| ||||||| |||||| || ||||||| |||| ||||||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 61 ttcaaatattgag 73
| ||||| |||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 73.8 bits (37), Expect = 7e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 117 tgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctcc 173
|||||||||||||||||| |||||||| |||||| | |||||||||||||||||||
Sbjct: 119 tgatgcgggagacaaattaaatcttaaacttcctatcattggactgaagggagctcc 175
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 37 tttaattagctgccgactcattcattcaaatattgagt 74
||||||||| | ||||||||||||| |||||| |||||
Sbjct: 49 tttaattagttaccgactcattcatccaaatactgagt 86
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||||||| || | |||||| |||||||||||||||||||||
Sbjct: 20 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 72
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 61.9 bits (31), Expect = 3e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttta-attagctgccgactcattc 59
|||||| ||||||||||||||||| || | ||||||| |||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 60 attcaaa 66
|||||||
Sbjct: 61 attcaaa 67
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 61.9 bits (31), Expect = 3e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttt-aattagctgccgactcattc 59
||||| ||||||||||||||||||| || | ||| ||| ||||| ||||||||||||||
Sbjct: 13 gagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgactcattc 72
Query: 60 attcaaa 66
|||||||
Sbjct: 73 attcaaa 79
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 58.0 bits (29), Expect = 4e-08
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttta--attagctgccgactcatt 58
|||||| ||||||||||||||||| ||| | ||||| || ||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggatgg-gttaggggtttggattagctgccgactcatt 71
Query: 59 cattcaaa 66
||||||||
Sbjct: 72 cattcaaa 79
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||| ||| || | |||||| |||||||||||||||||||||
Sbjct: 20 cttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 72
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||| ||| || | |||||| |||||||||||||||||||||
Sbjct: 20 cttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 72
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 34 gggtttaattagctgccgactcattcattcaa 65
||||| ||||||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattcattcaa 79
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa
Japonica Group
Length = 193
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| | |||| ||||||||| |||||||||||| |||| ||
Sbjct: 13 gagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatcatcca 72
Query: 61 ttca 64
||||
Sbjct: 73 ttca 76
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 52.0 bits (26), Expect = 3e-06
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactgaagggagct 171
||||||||||| |||||||||||| |||| | |||| || | ||||||||||||||||||
Sbjct: 119 tgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactgaagggagct 177
Query: 172 cc 173
||
Sbjct: 178 cc 179
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattcattca 64
||||||||||||||||||||||||
Sbjct: 54 attagctgccgactcattcattca 77
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 34 gggtttaattagctgccgactcattcattcaa 65
||||| || |||||||||||||||||||||||
Sbjct: 48 gggttgaactagctgccgactcattcattcaa 79
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| |||| |||| |||| ||||||||||||||||| ||
Sbjct: 13 gagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatcca 72
Query: 61 ttca 64
||||
Sbjct: 73 ttca 76
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcattcaaa 66
|||||||||| ||||||||||||||||
Sbjct: 53 aattagctgctgactcattcattcaaa 79
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcattcaaa 66
|||||||||| ||||||||||||||||
Sbjct: 33 aattagctgctgactcattcattcaaa 59
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya
(papaya)
Length = 192
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 tagctgccgactcattcattca 64
||||||||||||||||||||||
Sbjct: 58 tagctgccgactcattcattca 79
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 44.1 bits (22), Expect = 6e-04
Identities = 57/68 (83%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggta---gggtttaattagctgccgactcat 57
|||||| |||||| |||||||||| ||| |||| ||| | || || ||||||||||||
Sbjct: 13 gagcttccttcagcccactcatggatgggggtaaaggggctgaagtatctgccgactcat 72
Query: 58 tcattcaa 65
||||||||
Sbjct: 73 tcattcaa 80
