miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46604_miR398:micropc
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 caggagtgacctgagatcacatgtagcatttatgtattgcacttgatgtgttctcaggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggagtgacctgagatcacatgtagcatttatgtattgcacttgatgtgttctcaggtc 60
Query: 61 gcccctg 67
|||||||
Sbjct: 61 gcccctg 67
>46114_miR398:micropc
Length = 65
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 2 aggagtgacctgagatcacatgtagcatttatgtattgcacttgatgtgttctcaggtcg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacctgagatcacatgtagcatttatgtattgcacttgatgtgttctcaggtcg 60
Query: 62 cccct 66
|||||
Sbjct: 61 cccct 65
>45192_miR398:micropc
Length = 65
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 2 aggagtgacctgagatcacatgtagcatttatgtattgcacttgatgtgttctcaggtcg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacctgagatcacatgtagcatttatgtattgcacttgatgtgttctcaggtcg 60
Query: 62 cccct 66
|||||
Sbjct: 61 cccct 65
>46371_miR398:micropc
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 56 atgtgttctcaggtcgcccctg 77
>46116_miR398:micropc
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 56 atgtgttctcaggtcgcccctg 77
>46034_miR398:micropc
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 56 atgtgttctcaggtcgcccctg 77
>45519_miR398:micropc
Length = 61
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 40 atgtgttctcaggtcgcccctg 61
>45422_miR398:micropc
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 57 atgtgttctcaggtcgcccctg 78
>45294_miR398:micropc
Length = 98
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 77 atgtgttctcaggtcgcccctg 98
>44891_miR398:micropc
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccctg 67
||||||||||||||||||||||
Sbjct: 68 atgtgttctcaggtcgcccctg 89
>46795_miR398:micropc
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcgcccctg 67
|||||||||||||||||||||
Sbjct: 81 tgtgttctcaggtcgcccctg 101
>46690_miR398:micropc
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 55 atgtgttctcaggtcgcccct 75
>46686_miR398:micropc
Length = 96
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 76 atgtgttctcaggtcgcccct 96
>46392_miR398:micropc
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcgcccctg 67
|||||||||||||||||||||
Sbjct: 48 tgtgttctcaggtcgcccctg 68
>46304_miR398:micropc
Length = 59
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 39 atgtgttctcaggtcgcccct 59
>46303_miR398:micropc
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 55 atgtgttctcaggtcgcccct 75
>46111_miR398:micropc
Length = 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 56 atgtgttctcaggtcgcccct 76
>46074_miR398:micropc
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 55 atgtgttctcaggtcgcccct 75
>45095_miR398:micropc
Length = 87
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccct 66
|||||||||||||||||||||
Sbjct: 67 atgtgttctcaggtcgcccct 87
>46367_miR398:micropc
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 gtgttctcaggtcgcccctg 67
||||||||||||||||||||
Sbjct: 54 gtgttctcaggtcgcccctg 73
>45930_miR398:micropc
Length = 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 gtgttctcaggtcgcccctg 67
||||||||||||||||||||
Sbjct: 44 gtgttctcaggtcgcccctg 63
>45920_miR398:micropc
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccc 65
||||||||||||||||||||
Sbjct: 85 atgtgttctcaggtcgcccc 104
>45898_miR398:micropc
Length = 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcgcccct 66
||||||||||||||||||||
Sbjct: 47 tgtgttctcaggtcgcccct 66
>45694_miR398:micropc
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcgcccct 66
||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcgcccct 99
>45284_miR398:micropc
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 46 atgtgttctcaggtcgcccc 65
||||||||||||||||||||
Sbjct: 85 atgtgttctcaggtcgcccc 104
>45087_miR398:micropc
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 gtgttctcaggtcgcccctg 67
||||||||||||||||||||
Sbjct: 65 gtgttctcaggtcgcccctg 84
>46550_miR398:micropc
Length = 61
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 tgttctcaggtcgcccctg 67
|||||||||||||||||||
Sbjct: 43 tgttctcaggtcgcccctg 61
>45384_miR398:micropc
Length = 83
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 gtgttctcaggtcgcccct 66
|||||||||||||||||||
Sbjct: 65 gtgttctcaggtcgcccct 83
>45163_miR398:micropc
Length = 71
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 gtgttctcaggtcgcccct 66
|||||||||||||||||||
Sbjct: 53 gtgttctcaggtcgcccct 71
>44941_miR398:micropc
Length = 61
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 gtgttctcaggtcgcccct 66
|||||||||||||||||||
Sbjct: 43 gtgttctcaggtcgcccct 61
