miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 83.8 bits (42), Expect = 7e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 60
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 tccaca 66
||||||
Sbjct: 73 tccaca 78
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 96 taggcttgtggcttgcatacctcaggagctgcattacc 133
|||||||| || ||||||| ||||||||||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattacc 145
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 60
|||||||||||||||||||||||| | |||| ||| ||| |||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 61 tccaca 66
|||||
Sbjct: 61 cccaca 66
Score = 48.1 bits (24), Expect = 4e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 105 ggcttgcatacctcaggagctgcattacctga-gttgcatcatgttttggattgaaggga 163
|||||||||| |||||||||| ||||||| | ||| ||| | ||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 160
Query: 164 gctc 167
||||
Sbjct: 161 gctc 164
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 75.8 bits (38), Expect = 2e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 60
|||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 tccaca 66
|||||
Sbjct: 73 cccaca 78
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 94 gataggcttgtggcttgcatacctcaggagctgcattacct 134
||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacct 146
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 94 gataggcttgtggcttgcatacctcaggagctgcatta 131
||||||||||||||||||||| ||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcatta 143
Score = 54.0 bits (27), Expect = 6e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctga 51
|||||||||||||||||||||| | | || || ||| ||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctga 63
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatg 57
|||||||||||||||||||||| | | ||||| ||| |||| ||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagatgttgctaggtt-gattgagctgctgagctatgaa 59
|||||||||||||||||| ||||||| | | ||||| |||||||||||||| ||||| |
Sbjct: 13 gagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacctatgga 71
Query: 60 ttcc 63
||||
Sbjct: 72 ttcc 75
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 142 atcatgttttggattgaagggagctc 167
||||| ||||||||||||||||||||
Sbjct: 161 atcattttttggattgaagggagctc 186
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 94 gataggcttgtggcttgcatacctcaggagctgcat 129
||||||||| |||||||||| || ||||||||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcat 222
