miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 gacagaagagagagagcacaacccgagaaatggtcaaagaatcttttacctttgttggga 60
||||||||||||||||||||||||| | || ||||| ||||| ||||||||||||
Sbjct: 3 gacagaagagagagagcacaacccggcattaggctaaagagtctttg-cctttgttggga 61
Query: 61 gtgtgctctctactcttctgtc 82
||||||||||| ||||||||||
Sbjct: 62 gtgtgctctctcctcttctgtc 83
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagagagcacaacccg 25
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagagagcacaacccg 27
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagagagcacaaccc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagagagcacaaccc 26
