miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48852_osa-miR166i:pmrd
          Length = 145

 Score =  266 bits (134), Expect = 5e-72
 Identities = 142/145 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  agataggtgttnggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 70
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agataggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 60

                                                                       
Query: 71  atatcttgtgatatgggggatatgcaacaagtgtgtgacaggggtgggtagatctcggat 130
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 61  atatcttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggat 120

                                    
Query: 131 caggcttcattcctcacaccaatac 155
           |||||||||||||||||||||||||
Sbjct: 121 caggcttcattcctcacaccaatac 145




>48853_osa-miR166j:pmrd
          Length = 140

 Score =  256 bits (129), Expect = 5e-69
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  agataggtgttnggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 70
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agataggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatc 60

                                                                       
Query: 71  atatcttgtgatatgggggatatgcaacaagtgtgtgacaggggtgggtagatctcggat 130
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 61  atatcttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggat 120

                               
Query: 131 caggcttcattcctcacacc 150
           ||||||||||||||||||||
Sbjct: 121 caggcttcattcctcacacc 140




>48850_osa-miR166g:pmrd
          Length = 145

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 121 gatctcggatcaggcttcattcctcacacc 150
           ||||||||| ||||||||||||||||||||
Sbjct: 111 gatctcggaccaggcttcattcctcacacc 140




>54789_vvi-miR166a:pmrd
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 121 gatctcggatcaggcttcattcctcacaccaa 152
           ||||||||| |||||||||||||| |||||||
Sbjct: 96  gatctcggaccaggcttcattcctgacaccaa 127




>54968_zma-miR166l:pmrd
          Length = 137

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 120 agatctcggatcaggcttcattcctca 146
           |||||||||| ||||||||||||||||
Sbjct: 93  agatctcggaccaggcttcattcctca 119




>51639_ptc-miR166o:pmrd
          Length = 324

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 16 ggtgttnggaatgcagtttgatccaagatc 45
          |||||| |||||| ||||||||||||||||
Sbjct: 5  ggtgtttggaatgaagtttgatccaagatc 34



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 gatctcggatcaggcttcattcctcacacc 150
           ||||||||| |||||||||||||| |||||
Sbjct: 292 gatctcggaccaggcttcattccttacacc 321




>51638_ptc-miR166n:pmrd
          Length = 331

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 16 ggtgttnggaatgcagtttgatccaagatc 45
          |||||| |||||| ||||||||||||||||
Sbjct: 5  ggtgtttggaatgaagtttgatccaagatc 34



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 gatctcggatcaggcttcattcctcacacc 150
           ||||||||| |||||||||||||| |||||
Sbjct: 299 gatctcggaccaggcttcattccttacacc 328




>46868_aqc-miR166c:pmrd
          Length = 116

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 121 gatctcggatcaggcttcattcctcacacca 151
           ||||||||| |||||||||||||| ||||||
Sbjct: 85  gatctcggaccaggcttcattccttacacca 115




>54957_zma-miR166a:pmrd
          Length = 213

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 118 gtagatctcggatcaggcttcattcc 143
           |||||||||||| |||||||||||||
Sbjct: 182 gtagatctcggaccaggcttcattcc 207




>54423_sbi-miR166h:pmrd
          Length = 185

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 118 gtagatctcggatcaggcttcattcc 143
           |||||||||||| |||||||||||||
Sbjct: 155 gtagatctcggaccaggcttcattcc 180




>48845_osa-miR166b:pmrd
          Length = 206

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 118 gtagatctcggatcaggcttcattcc 143
           |||||||||||| |||||||||||||
Sbjct: 161 gtagatctcggaccaggcttcattcc 186




>48713_mtr-miR166c:pmrd
          Length = 171

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 121 gatctcggatcaggcttcattcctc 145
           ||||||||| |||||||||||||||
Sbjct: 147 gatctcggaccaggcttcattcctc 171




>54960_zma-miR166d:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 120 agatctcggatcaggcttcattcc 143
           |||||||||| |||||||||||||
Sbjct: 79  agatctcggaccaggcttcattcc 102




>54958_zma-miR166b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 120 agatctcggatcaggcttcattcc 143
           |||||||||| |||||||||||||
Sbjct: 91  agatctcggaccaggcttcattcc 114




>54416_sbi-miR166a:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 120 agatctcggatcaggcttcattcc 143
           |||||||||| |||||||||||||
Sbjct: 83  agatctcggaccaggcttcattcc 106