miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46709_miR156:micropc
Length = 90
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 61
Query: 61 tatgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||||
Sbjct: 62 tatgcgtgtgctcacttctctttctgtc 89
>46146_miR156:micropc
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 3 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
Query: 63 tgcgtgtgctcacttctctttctg 86
||||||||||||||||||||||||
Sbjct: 61 tgcgtgtgctcacttctctttctg 84
>46069_miR156:micropc
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 60
Query: 61 tatgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||||
Sbjct: 61 tatgcgtgtgctcacttctctttctgtc 88
>45385_miR156:micropc
Length = 90
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 61
Query: 61 tatgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||||
Sbjct: 62 tatgcgtgtgctcacttctctttctgtc 89
>45182_miR156:micropc
Length = 90
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 61
Query: 61 tatgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||||
Sbjct: 62 tatgcgtgtgctcacttctctttctgtc 89
>46842_miR156:micropc
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 3 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 62
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 60
Query: 63 tgcgtgtgctcacttctctttctg 86
||||||||||||||||||||||||
Sbjct: 61 tgcgtgtgctcacttctctttctg 84
>45582_miR156:micropc
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||||||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
>45528_miR156:micropc
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||||||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
>45113_miR156:micropc
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||||||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
>45062_miR156:micropc
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||||||||||||| |||||
Sbjct: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtc 90
>45047_miR156:micropc
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||||||||||||| |||||
Sbjct: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtc 90
>44842_miR156:micropc
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||||||||||||| |||||
Sbjct: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtc 90
>44793_miR156:micropc
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
|||||||||||||||| || ||| ||||| ||||| | || |||||||||||| || |
Sbjct: 2 gacagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgagt 60
Query: 61 tatgcgtgtgctcacttctctt 82
||||||||||||||||||||||
Sbjct: 61 tatgcgtgtgctcacttctctt 82
>45810_miR156:micropc
Length = 91
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||| |||||||||| |||||
Sbjct: 53 ttgttggaattatgcgtgtgcccacttctcttgctgtc 90
>45659_miR156:micropc
Length = 89
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||| |||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgcccacttctcttgctgtc 89
>46707_miR156:micropc
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||
Sbjct: 65 tgcgtgtgctcacttctctttctgtc 90
>46153_miR156:micropc
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtc 91
>45524_miR156:micropc
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctgtc 88
||||||||||||||||||||||||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtc 91
>46175_miR156:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/91 (83%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
|||||||||||||||||| || |||| ||||| ||||| ||| ||||||||| |||
Sbjct: 2 gacagaagagagtgagcatatgcaagcaattgtatagagaga-tatgctcttgttgtaat 60
Query: 61 t---atgcgtgtgctcacttctctttctgtc 88
| ||||||||||||||||||||| |||||
Sbjct: 61 tatgatgcgtgtgctcacttctcttgctgtc 91
>45587_miR156:micropc
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/91 (83%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
|||||||||||||||||| || |||| ||||| ||||| ||| ||||||||| |||
Sbjct: 1 gacagaagagagtgagcatatgcaagcaattgtatagagaga-tatgctcttgttgtaat 59
Query: 61 t---atgcgtgtgctcacttctctttctgtc 88
| ||||||||||||||||||||| |||||
Sbjct: 60 tatgatgcgtgtgctcacttctcttgctgtc 90
>46798_miR156:micropc
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 tatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||| |||||
Sbjct: 58 tatgcgtgtgctcacttctcttgctgtc 85
>46066_miR156:micropc
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctg 86
||||||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctttctg 86
>45125_miR156:micropc
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 tatgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||||||| |||||
Sbjct: 57 tatgcgtgtgctcacttctcttgctgtc 84
>46749_miR156:micropc
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||| |||||||
Sbjct: 59 tgcgtgtgctcacttctcattctgtc 84
>46538_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||| |||||||
Sbjct: 60 tgcgtgtgctcacttctcattctgtc 85
>46134_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctgtc 88
|||||||||||||||||| |||||||
Sbjct: 60 tgcgtgtgctcacttctcattctgtc 85
>46824_miR156:micropc
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctgtc 83
>46408_miR156:micropc
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtc 80
>45823_miR156:micropc
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctgtc 83
>45776_miR156:micropc
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctgtc 83
>45314_miR156:micropc
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtc 80
>45286_miR156:micropc
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 63 gtgctcacttctctttctgtc 83
>45274_miR156:micropc
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtc 80
>45251_miR156:micropc
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 gtgctcacttctctttctgtc 88
|||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtc 80
>45549_miR156:micropc
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 tgcgtgtgctcacttctctttctg 86
|||||||||||||||||| |||||
Sbjct: 57 tgcgtgtgctcacttctcattctg 80
