miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 502 bits (253), Expect = e-141
Identities = 264/267 (98%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 1 tgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgc 62
Query: 61 tgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaagaa 122
Query: 121 actactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactc---g 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 123 actactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgttg 182
Query: 178 ttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctct 242
Query: 238 ttggattgaagggagctctgcatcttt 264
|||||||||||||||||||||||||||
Sbjct: 243 ttggattgaagggagctctgcatcttt 269
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 234 ctctttggattgaagggagctctgcatctt 263
||||||||||||||||||||||||||||||
Sbjct: 152 ctctttggattgaagggagctctgcatctt 181
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 234 ctctttggattgaagggagctctgcatc 261
||||||||||||||||||||||||||||
Sbjct: 198 ctctttggattgaagggagctctgcatc 225
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 234 ctctttggattgaagggagctctgcatc 261
||||||||||||||||||||||||||||
Sbjct: 209 ctctttggattgaagggagctctgcatc 236
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 235 tctttggattgaagggagctctgcatctt 263
|||||||||||||||||||||| ||||||
Sbjct: 170 tctttggattgaagggagctctacatctt 198
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 235 tctttggattgaagggagctctgcatct 262
|||||||||||||||||||||| |||||
Sbjct: 174 tctttggattgaagggagctcttcatct 201
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 237 tttggattgaagggagctctgcatctt 263
|||||| ||||||||||||||||||||
Sbjct: 190 tttggagtgaagggagctctgcatctt 216
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 237 tttggattgaagggagctctgcatct 262
|||||||||||||||||||| |||||
Sbjct: 162 tttggattgaagggagctctacatct 187
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 238 ttggattgaagggagctctgcatctt 263
||||||||||||||||||||| ||||
Sbjct: 197 ttggattgaagggagctctgcgtctt 222
