miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 119 bits (60), Expect = 6e-27
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 60
|||||||||||||||||||||||||||||||||||||| || || ||| ||||||||
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttac--atgtatagagttgtaaaata 65
Query: 61 cgatctcagattgagccgcgccaatatcact 91
|||||||||||||||||||||||||||||||
Sbjct: 66 cgatctcagattgagccgcgccaatatcact 96
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 99.6 bits (50), Expect = 6e-21
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 60
|||||||||||||||||||||||||||||||||||||| |||| || ||||| |
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttac----acattctgttgtaaagga 63
Query: 61 cgatctcagattgagccgcgccaatatcact 91
|||||||||||||||||||||||||||||||
Sbjct: 64 cgatctcagattgagccgcgccaatatcact 94
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 95.6 bits (48), Expect = 9e-20
Identities = 80/91 (87%), Gaps = 6/91 (6%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 60
||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttacgaa------gagccgtaaagaa 61
Query: 61 cgatctcagattgagccgcgccaatatcact 91
||||||| |||||||||||||||||||||||
Sbjct: 62 cgatctctgattgagccgcgccaatatcact 92
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 81.8 bits (41), Expect = 1e-15
Identities = 80/91 (87%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 60
||||||||||||||||||||||||||||||| ||||| | | ||| ||||||| |
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacgaatttatg--cttatt--ttcgtaaagaa 63
Query: 61 cgatctcagattgagccgcgccaatatcact 91
|||||||||||||||||||||||||||||||
Sbjct: 64 cgatctcagattgagccgcgccaatatcact 94
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 73.8 bits (37), Expect = 3e-13
Identities = 79/91 (86%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 60
|||||||||||||||||||||||||||||| ||||||| || | | |||||||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacac---gagtgaaa-gtaaaatc 56
Query: 61 cgatctcagattgagccgcgccaatatcact 91
|||||||||||||||||||||||||||||||
Sbjct: 57 cgatctcagattgagccgcgccaatatcact 87
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttac 38
||||||||||||||||||||||| |||||| |||||||
Sbjct: 8 agcgatgttggtgaggttcaatctgaagacagatttac 45
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 gatctcagattgagccgcgccaatatcact 91
||||||||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatatcact 92
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 65 ctcagattgagccgcgccaatatcac 90
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 tcagattgagccgcgccaatatcac 90
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gattgagccgcgccaatatcact 91
|||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcact 110
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gattgagccgcgccaatatcac 90
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gattgagccgcgccaatatcac 90
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccga 26
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
