miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 194 bits (98), Expect = 2e-49
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 22 ccgtgcacggtggagaagcagggcacgtgcttcaccatccactcgcctgccggccgccgg 81
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 1 ccgtgcacggtggagaagcagggcacgtgcattaccatccactcgcctgccggccgccgg 60
Query: 82 ccgccattgccatggatggttcttcatgtgcccgtcttctccaccg 127
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgccattgccatggatggttcttcatgtgcccgtcttctccaccg 106
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 93 atggatggttcttcatgtgcccgtcttctccaccg 127
|||||||||||||||||||||| ||||||||||||
Sbjct: 105 atggatggttcttcatgtgcccatcttctccaccg 139
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 24 gtgcacggtggagaagcagggcacgtgcttcaccatcca 62
||||| |||||||||||||||||||||| | ||||||||
Sbjct: 3 gtgcatggtggagaagcagggcacgtgcattaccatcca 41
>RF00647;MIR164;AC226813.1/114113-114237 63629:Oryza minuta
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 gtgcacggtggagaagcagggcacgtg 50
||||| |||||||||||||||||||||
Sbjct: 3 gtgcagggtggagaagcagggcacgtg 29
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 tggatggttcttcatgtgcccgtcttctccaccg 127
||||||| | |||||||| |||||||||||||||
Sbjct: 85 tggatgggtgttcatgtgtccgtcttctccaccg 118
>RF00647;MIR164;ABRL01001123.1/4697-4828 65489:Oryza barthii
Length = 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 gtgcacggtggagaagcagggcacgtg 50
||||| |||||||||||||||||||||
Sbjct: 3 gtgcagggtggagaagcagggcacgtg 29
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 tggatggttcttcatgtgcccgtcttctccaccg 127
|||||||| |||||||| |||||||||||||||
Sbjct: 92 tggatggtcgttcatgtgtccgtcttctccaccg 125
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ggtggagaagcagggcacgtgc 51
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ggtggagaagcagggcacgtgc 51
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ggtggagaagcagggcacgtgc 51
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
