miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 244 bits (123), Expect = 2e-64
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 5 gacatactccctctgtcccaaaataaacccgatgtgacacatactagtacttgtgtccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gacatactccctctgtcccaaaataaacccgatgtgacacatactagtacttgtgtccaa 64
Query: 65 gatgtattaggatgtggcacatccgtacaatgttggtttattttggaacagagtgagtat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gatgtattaggatgtggcacatccgtacaatgttggtttattttggaacagagtgagtat 4
Query: 125 atg 127
|||
Sbjct: 3 atg 1
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 catactccctctgtcccaaaataa 30
||||||||||||||||||||||||
Sbjct: 104 catactccctctgtcccaaaataa 81
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 acatactccctctgtcccaaaataaacc 33
|||||||||||| |||||||||||||||
Sbjct: 121 acatactccctccgtcccaaaataaacc 94
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 acatactccctctgtcccaaaata 29
||||||||||||||||||||||||
Sbjct: 2 acatactccctctgtcccaaaata 25
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccaaaataa 30
|||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaataa 26
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccaaaataa 30
|||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaataa 26
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 gacatactccctctgtcccaaaataaa 31
||||||||||||| |||||||||||||
Sbjct: 1 gacatactccctccgtcccaaaataaa 27
>RF00906;MIR1122;AP004621.3/94317-94428 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 acatactccctctgtcccaaaat 28
|||||||||||||||||||||||
Sbjct: 2 acatactccctctgtcccaaaat 24
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 gacatactccctctgtcccaaaataaa 31
||||||||||||| |||||||||||||
Sbjct: 1 gacatactccctccgtcccaaaataaa 27
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catactccctctgtcccaaaataaacc 33
||||||||||| |||||||||||||||
Sbjct: 3 catactccctccgtcccaaaataaacc 29
>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccaaaata 29
||||||||||||||||||||||
Sbjct: 1 atactccctctgtcccaaaata 22
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 atactccctctgtcccaaaata 29
||||||||||||||||||||||
Sbjct: 243 atactccctctgtcccaaaata 222
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataa 30
||||||||||||||||||||||
Sbjct: 64 tactccctctgtcccaaaataa 43
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa
Japonica Group
Length = 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccaaaata 29
||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaata 25
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 atactccctctgtcccaaaata 29
||||||||||||||||||||||
Sbjct: 128 atactccctctgtcccaaaata 107
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataa 30
||||||||||||||||||||||
Sbjct: 117 tactccctctgtcccaaaataa 96
