miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 gacctcggaccaggcttcattcctctcag 110
||||||||||||||||||||||| |||||
Sbjct: 85 gacctcggaccaggcttcattcccctcag 113
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 aaatgacctcggaccaggcttcattcct 105
|||||| |||||||||||||||||||||
Sbjct: 291 aaatgatctcggaccaggcttcattcct 318
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 tcggaccaggcttcattcctctca 109
||||||||||||||||||||||||
Sbjct: 64 tcggaccaggcttcattcctctca 87
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctctc 108
||||||||||||||||||||||||
Sbjct: 72 ctcggaccaggcttcattcctctc 95
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgacctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 111 tgacctcggaccaggcttcattcc 134
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgacctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 112 tgacctcggaccaggcttcattcc 135
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 84 cctcggaccaggcttcattcctctcagc 111
||||||||||||||||||||| ||||||
Sbjct: 47 cctcggaccaggcttcattcccctcagc 74
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 aatgacctcggaccaggcttcattcctctca 109
|||||| ||||||||||||||||||| ||||
Sbjct: 113 aatgacgtcggaccaggcttcattcccctca 143
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 74 ttctaaatgacctcggaccaggcttcattcc 104
|||| ||||| ||||||||||||||||||||
Sbjct: 57 ttctgaatgatctcggaccaggcttcattcc 87
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctctcagc 111
|||||||||||||||||||| ||||||
Sbjct: 92 ctcggaccaggcttcattcccctcagc 118
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 87 ctcggaccaggcttcattcctc 108
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 80 atgacctcggaccaggcttcattcctctca 109
||||| ||||||||||||||||||| ||||
Sbjct: 91 atgacgtcggaccaggcttcattcccctca 120
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 cctcggaccaggcttcattcctctca 109
||||||||||||||||||||| ||||
Sbjct: 61 cctcggaccaggcttcattcccctca 86
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 aatgacctcggaccaggcttcattcc 104
||||| ||||||||||||||||||||
Sbjct: 60 aatgatctcggaccaggcttcattcc 85
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 cctcggaccaggcttcattcctctca 109
||||||||||||||||||||| ||||
Sbjct: 67 cctcggaccaggcttcattcccctca 92
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 aatgacctcggaccaggcttcattcc 104
||||| ||||||||||||||||||||
Sbjct: 60 aatgatctcggaccaggcttcattcc 85
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 155 ctcggaccaggcttcattcctc 176
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 79 ctcggaccaggcttcattcctc 100
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 140 ctcggaccaggcttcattcctc 161
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 tcggaccaggcttcattcctctcagc 111
||||||||||||||||||| ||||||
Sbjct: 72 tcggaccaggcttcattcccctcagc 97
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 cctcggaccaggcttcattcctctca 109
||||||||||||||||||||| ||||
Sbjct: 123 cctcggaccaggcttcattcccctca 148
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 aatgacctcggaccaggcttcattcc 104
||||| ||||||||||||||||||||
Sbjct: 58 aatgatctcggaccaggcttcattcc 83
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctctcag 110
|||||||||||||||||||| |||||
Sbjct: 88 ctcggaccaggcttcattcccctcag 113
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 62 ctcggaccaggcttcattcctc 83
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 90 ctcggaccaggcttcattcctc 111
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctctcag 110
|||||||||||||||||||| |||||
Sbjct: 95 ctcggaccaggcttcattcccctcag 120
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctcggaccaggcttcattcctc 106
||||||||||||||||||||||
Sbjct: 109 ctcggaccaggcttcattcctc 130
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 tcggaccaggcttcattcctctcagc 111
||||||||||||||||||| ||||||
Sbjct: 70 tcggaccaggcttcattcccctcagc 95
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 tcggaccaggcttcattcctctcagc 111
||||||||||||||||||| ||||||
Sbjct: 70 tcggaccaggcttcattcccctcagc 95
>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 tcggaccaggcttcattcctctcagc 111
||||||||||||||||||| ||||||
Sbjct: 70 tcggaccaggcttcattcccctcagc 95
>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
patens subsp. patens
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 tcggaccaggcttcattcctctcagc 111
||||||||||||||||||| ||||||
Sbjct: 71 tcggaccaggcttcattcccctcagc 96
