miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 226 bits (114), Expect = 5e-59
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 actctgttccaaaataaaccaacattgtacggatgtgccacatcctaatacatcttggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 actctgttccaaaataaaccaacattgtacggatgtgccacatcctaatacatcttggac 69
Query: 61 acaagtactagtatgtgtcacatcgggtttattttgggacagagggagtatgtc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 acaagtactagtatgtgtcacatcgggtttattttgggacagagggagtatgtc 123
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 ttattttgggacagagggagtatg 112
||||||||||||||||||||||||
Sbjct: 81 ttattttgggacagagggagtatg 104
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 ggtttattttgggacagagggagtatgt 113
||||||||||||||| ||||||||||||
Sbjct: 94 ggtttattttgggacggagggagtatgt 121
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 90 tattttgggacagagggagtatgt 113
||||||||||||||||||||||||
Sbjct: 25 tattttgggacagagggagtatgt 2
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 89 ttattttgggacagagggagtat 111
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacagagggagtat 4
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 89 ttattttgggacagagggagtat 111
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacagagggagtat 4
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 tttattttgggacagagggagtatgtc 114
||||||||||||| |||||||||||||
Sbjct: 27 tttattttgggacggagggagtatgtc 1
>RF00906;MIR1122;AP004621.3/94317-94428 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 91 attttgggacagagggagtatgt 113
|||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtatgt 2
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 tttattttgggacagagggagtatgtc 114
||||||||||||| |||||||||||||
Sbjct: 27 tttattttgggacggagggagtatgtc 1
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 ggtttattttgggacagagggagtatg 112
||||||||||||||| |||||||||||
Sbjct: 29 ggtttattttgggacggagggagtatg 3
>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 tattttgggacagagggagtat 111
||||||||||||||||||||||
Sbjct: 22 tattttgggacagagggagtat 1
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttgggacagagggagtat 111
||||||||||||||||||||||
Sbjct: 222 tattttgggacagagggagtat 243
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ttattttgggacagagggagta 110
||||||||||||||||||||||
Sbjct: 43 ttattttgggacagagggagta 64
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 tattttgggacagagggagtat 111
||||||||||||||||||||||
Sbjct: 25 tattttgggacagagggagtat 4
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tattttgggacagagggagtat 111
||||||||||||||||||||||
Sbjct: 107 tattttgggacagagggagtat 128
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ttattttgggacagagggagta 110
||||||||||||||||||||||
Sbjct: 96 ttattttgggacagagggagta 117
