miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gggggtaacatgagaatacatgaaatagatactatcagagagtcattccattgtagtatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggggtaacatgagaatacatgaaatagatactatcagagagtcattccattgtagtatc 60
Query: 61 agtttcttccatgtgttctcaggtcgcccctgc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 agtttcttccatgtgttctcaggtcgcccctgc 93
>40382_rco-MIR398b:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 ttcttccatgtgttctcaggtcgcccctgc 93
||||| ||||||||||||||||||||||||
Sbjct: 93 ttctttcatgtgttctcaggtcgcccctgc 122
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ccatgtgttctcaggtcgcccctg 92
||||||||||||||||||||||||
Sbjct: 84 ccatgtgttctcaggtcgcccctg 107
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ccatgtgttctcaggtcgcccctg 92
||||||||||||||||||||||||
Sbjct: 93 ccatgtgttctcaggtcgcccctg 116
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccctgc 79
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccctgc 79
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccctgc 89
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccctgc 77
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||||
Sbjct: 60 catgtgttctcaggtcgcccctgc 83
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 atgtgttctcaggtcgcccctgc 93
|||||||||||||||||||||||
Sbjct: 84 atgtgttctcaggtcgcccctgc 106
>42818_zma-MIR398b:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tcttccatgtgttctcaggtcgcccc 90
|||| |||||||||||||||||||||
Sbjct: 80 tcttgcatgtgttctcaggtcgcccc 105
>42040_osa-MIR398b:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgc 79
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgtgttctcaggtcgcccctgc 93
||||||||||||||||||||||
Sbjct: 62 tgtgttctcaggtcgcccctgc 83
>42817_zma-MIR398a:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccc 90
|||||||||||||||||||||
Sbjct: 117 catgtgttctcaggtcgcccc 137
>42645_tae-MIR398:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccc 90
|||||||||||||||||||||
Sbjct: 83 catgtgttctcaggtcgcccc 103
>42588_sbi-MIR398:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccc 90
|||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccc 106
>40091_ath-MIR398c:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
|||||||||||||||| |||||||
Sbjct: 83 catgtgttctcaggtcacccctgc 106
>40090_ath-MIR398b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
|||||||||||||||| |||||||
Sbjct: 84 catgtgttctcaggtcacccctgc 107
>39882_aly-MIR398b:mirbase
Length = 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 catgtgttctcaggtcgcccctgc 93
|||||||||||||||| |||||||
Sbjct: 89 catgtgttctcaggtcacccctgc 112
