miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 64  ttcttccatgtgttctcaggtcgcccctgc 93
           ||||| ||||||||||||||||||||||||
Sbjct: 100 ttctttcatgtgttctcaggtcgcccctgc 129

>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
          alba
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 catgtgttctcaggtcgcccctgc 93
          ||||||||||||||||||||||||
Sbjct: 49 catgtgttctcaggtcgcccctgc 72

>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
          trichocarpa
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 catgtgttctcaggtcgcccctgc 93
          ||||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccctgc 77

>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
          (barrel medic)
          Length = 97

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 catgtgttctcaggtcgcccctgc 93
          ||||||||||||||||||||||||
Sbjct: 65 catgtgttctcaggtcgcccctgc 88

>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 catgtgttctcaggtcgcccctgc 93
          ||||||||||||||||||||||||
Sbjct: 58 catgtgttctcaggtcgcccctgc 81

>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
          Length = 128

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 72  tgtgttctcaggtcgcccctgc 93
           ||||||||||||||||||||||
Sbjct: 98  tgtgttctcaggtcgcccctgc 119

>RF00695;MIR398;EU940707.1/90-217 4577:Zea mays
          Length = 128

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 65  tcttccatgtgttctcaggtcgcccc 90
           |||| |||||||||||||||||||||
Sbjct: 91  tcttgcatgtgttctcaggtcgcccc 116

>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
          Group
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 72 tgtgttctcaggtcgcccctgc 93
          ||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgc 79