miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41195_aqc-MIR477b:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 actctccctcaagggcttctaacagtcatttagaaaatgcagatgtaattagaagcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actctccctcaagggcttctaacagtcatttagaaaatgcagatgtaattagaagcactt 60
Query: 61 gcaggggagtat 72
||||||||||||
Sbjct: 61 gcaggggagtat 72
>41200_aqc-MIR477g:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 1 actctccctcaagggcttctaacagtcatttagaaaatgcagatgtaattagaagcactt 60
|||||||||||||||||||||| ||||| |||| ||| | |||||| |||||| ||||
Sbjct: 72 actctccctcaagggcttctaatggtcatatagagaattcttatgtaactagaagaactt 13
Query: 61 g 61
|
Sbjct: 12 g 12
>41198_aqc-MIR477e:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 1 actctccctcaagggcttctaacagtcatttagaaaatgcagatgtaattagaagcactt 60
||||||||||||||||||||| |||||| |||| ||| | |||||| |||||| ||||
Sbjct: 7 actctccctcaagggcttctattagtcatgtagagaattcttatgtaactagaagaactt 66
Query: 61 g 61
|
Sbjct: 67 g 67
>41196_aqc-MIR477c:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 1 actctccctcaagggcttctaacagtcatttagaaaatgcagatgtaattagaagcactt 60
|||||||||||||||||||||| ||||| |||| ||| | |||||| |||||| ||||
Sbjct: 72 actctccctcaagggcttctaatggtcatatagagaattcttatgtaactagaagaactt 13
Query: 61 g 61
|
Sbjct: 12 g 12
>41256_csi-MIR477b:mirbase
Length = 138
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 actctccctcaagggcttct 20
||||||||||||||||||||
Sbjct: 19 actctccctcaagggcttct 38
>41194_aqc-MIR477a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ctctccctcaagggcttcta 21
||||||||||||||||||||
Sbjct: 1 ctctccctcaagggcttcta 20
>41254_csi-MIR473:mirbase
Length = 159
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 actctccctcaagggcttc 19
|||||||||||||||||||
Sbjct: 21 actctccctcaagggcttc 39
