miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 539 bits (272), Expect = e-153
Identities = 275/276 (99%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatcgctacatacgacatacacacatcactaaacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaatcgctacatacgacatacacacatcactaaacttc 73
Query: 61 tttataatttatgcacacacatacagctcttaatggccacaactcaaagttataattagt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 74 tttataatttatgcacacacatacagctcttaatggccacaactcaaagatataattagt 133
Query: 121 gcatgatctctagttatttgactgcttttaatatatgtttatggattcacgcatgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gcatgatctctagttatttgactgcttttaatatatgtttatggattcacgcatgtgtgt 193
Query: 181 gtatgtacataatttacatgcatgcactttgtgtatggtacacatcaatttgaacccgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gtatgtacataatttacatgcatgcactttgtgtatggtacacatcaatttgaacccgtt 253
Query: 241 caaaattctgtttttattagtatatatatagatgta 276
||||||||||||||||||||||||||||||||||||
Sbjct: 254 caaaattctgtttttattagtatatatatagatgta 289
Score = 71.9 bits (36), Expect = 6e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 307 ttatagatagtagtactaggtcatcctgcagcttca 342
||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttatagatagtagtactaggtcatcctgcagcttca 355
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 202 bits (102), Expect = 2e-51
Identities = 144/156 (92%), Gaps = 9/156 (5%)
Strand = Plus / Plus
Query: 114 aattagtgcatgatctctagttatttgactgcttttaatatatgtttatggattcacgca 173
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 143 aattagtgcatgatctctagttctttgactgcttttaatatatgtttatggattcacgca 202
Query: 174 --tgtgtgtgtatgtacataatttacatgcatgcactttgtgtatggtacacatcaattt 231
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtgtgtgtgtatgtacatagtttacatgcatgcactttgtgtatggtacacatcaatt- 261
Query: 232 gaacccgttc-aaaattctgtttttattagtatata 266
||||| ||||||||| |||||||||||||||
Sbjct: 262 -----cgttcaaaaattctggttttattagtatata 292
Score = 135 bits (68), Expect = 5e-31
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatcgctacatacgacatacacacatcactaaacttc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaatcgctaca-acgacatacacacatcactaaactta 72
Query: 61 tttataatttatgcacacac 80
||||||||||||||||||||
Sbjct: 73 tttataatttatgcacacac 92
Score = 71.9 bits (36), Expect = 6e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 307 ttatagatagtagtactaggtcatcctgcagcttca 342
||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttatagatagtagtactaggtcatcctgcagcttca 353
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 202 bits (102), Expect = 2e-51
Identities = 144/156 (92%), Gaps = 9/156 (5%)
Strand = Plus / Plus
Query: 114 aattagtgcatgatctctagttatttgactgcttttaatatatgtttatggattcacgca 173
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 165 aattagtgcatgatctctagttctttgactgcttttaatatatgtttatggattcacgca 224
Query: 174 --tgtgtgtgtatgtacataatttacatgcatgcactttgtgtatggtacacatcaattt 231
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtgtgtgtgtatgtacatagtttacatgcatgcactttgtgtatggtacacatcaatt- 283
Query: 232 gaacccgttc-aaaattctgtttttattagtatata 266
||||| ||||||||| |||||||||||||||
Sbjct: 284 -----cgttcaaaaattctggttttattagtatata 314
Score = 178 bits (90), Expect = 3e-44
Identities = 109/114 (95%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatcgctacatacgacatacacacatcactaaacttc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaatcgctaca-acgacatacacacatcactaaactta 72
Query: 61 tttataatttatgcacacacatacagctcttaatggccacaactcaaagttata 114
||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 73 tttataatttatgcacacacatacacttcttaatggccacacctcaaagttata 126
Score = 71.9 bits (36), Expect = 6e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 307 ttatagatagtagtactaggtcatcctgcagcttca 342
||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttatagatagtagtactaggtcatcctgcagcttca 375
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaatc 27
|||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaatc 40
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggtaat 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctggt 23
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
