miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 252 bits (127), Expect = 1e-66
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 22 cgaatggaattgagccaaggatgacttgccggtttaaacccaaccggtttatgaccattg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaatggaattgagccaaggatgacttgccggtttaaacccaaccggtttatgaccattg 60
Query: 82 atttggtctcattcacaatctgttgattcgtgtctggcaagttgaccttggctctgcttc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttggtctcattcacaatctgttgattcgtgtctggcaagttgaccttggctctgcttc 120
Query: 142 gttctct 148
|||||||
Sbjct: 121 gttctct 127
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
||||||||||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 111 gtgtctggcaagttgaccttggctctgcttcgttctct 148
||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 68 gtgtccggcaagttgaccttggctctgtttccttctct 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ttgagccaaggatgacttgccgg 53
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 111 gtgtctggcaagttgaccttggctctgcttcgttct 146
||||| ||||||||||||||||||||| ||| ||||
Sbjct: 61 gtgtccggcaagttgaccttggctctgtttccttct 96
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 attgagccaaggatgacttgccg 52
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
|||||| |||||||||||||||||||||
Sbjct: 5 tggaatagagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
|||||| |||||||||||||||||||||
Sbjct: 5 tggaatagagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 attgagccaaggatgacttgccg 52
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||| ||||||||||||||||||||||
Sbjct: 5 tggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ttgagccaaggatgacttgccgg 53
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ttgagccaaggatgacttgccgg 53
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||| ||||||||||||||||
Sbjct: 5 tggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||| ||||||||||||||||||||||
Sbjct: 5 tggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||| ||||||||||||||||
Sbjct: 5 tggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
||||||||||||||||||| |||||||
Sbjct: 5 tggaattgagccaaggatggcttgccg 31
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||| ||||||||||||||||
Sbjct: 5 tggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccggtttaaa 59
||||||||||||||||||| ||||||
Sbjct: 13 agccaaggatgacttgccgatttaaa 38
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 gagccaaggatgacttgccggt 54
||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggt 33
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgagccaaggatgacttgccgg 53
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
