miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40071_ath-MIR319c:mirbase
Length = 199
Score = 394 bits (199), Expect = e-111
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
Query: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgataaatttaaaccgcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgataaatttaaaccgcagt 120
Query: 121 gactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaag 180
Query: 181 ggagctccttctttttcta 199
|||||||||||||||||||
Sbjct: 181 ggagctccttctttttcta 199
>39861_aly-MIR319d:mirbase
Length = 267
Score = 365 bits (184), Expect = e-102
Identities = 197/200 (98%), Gaps = 1/200 (0%)
Strand = Plus / Plus
Query: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 93
Query: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgat-aaatttaaaccgcag 119
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 94 atctgccgactcatccatccaaacactcgtggtagagaaacgatcaattttaaaccgcag 153
Query: 120 tgactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaa 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tgactgtatgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaa 213
Query: 180 gggagctccttctttttcta 199
||||||||||||||||||||
Sbjct: 214 gggagctccttctttttcta 233
>39860_aly-MIR319c:mirbase
Length = 271
Score = 365 bits (184), Expect = e-102
Identities = 197/200 (98%), Gaps = 1/200 (0%)
Strand = Plus / Plus
Query: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 93
Query: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgat-aaatttaaaccgcag 119
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 94 atctgccgactcatccatccaaacactcgtggtagagaaacgatcaattttaaaccgcag 153
Query: 120 tgactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaa 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tgactgtatgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaa 213
Query: 180 gggagctccttctttttcta 199
||||||||||||||||||||
Sbjct: 214 gggagctccttctttttcta 233
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| ||||| || || |||||| |||||||
Sbjct: 123 gtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggact 182
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 183 gaagggagctccttc 197
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| |||| ||||| |||||| |||||||
Sbjct: 121 gtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggact 180
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 181 gaagggagctccttc 195
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 69.9 bits (35), Expect = 7e-13
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| |||||||||||||||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 116 gtgaatgtgtgaatgatgcgggagataaatttcatccttttcttctctgtgcttggactg 175
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 176 aagggagctcc 186
>40369_rco-MIR319c:mirbase
Length = 188
Score = 69.9 bits (35), Expect = 7e-13
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| |||||||||||||||||||||| ||| || ||||| || |||||| ||||||||
Sbjct: 111 gtgaatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgcttggactg 170
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 171 aagggagctcc 181
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 61.9 bits (31), Expect = 2e-10
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||||||||||| || ||| |||||| | || |||||| ||||||||
Sbjct: 110 gtgaatgtgtgaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactg 169
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 170 aagggagctcc 180
>40466_gma-MIR319c:mirbase
Length = 221
Score = 60.0 bits (30), Expect = 7e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 157 tctttatctgtgtttggactgaagggagctccttctttttct 198
||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 170 tctttctctgtgcttggactgaaaggagctccttctttttct 211
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 54.0 bits (27), Expect = 4e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 113 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 172
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 173 aagggagctcc 183
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 157 tctttatctgtgtttggactgaagggagctccttcttt 194
||||| |||| | |||||||||||||||||||||||||
Sbjct: 397 tctttctctgagcttggactgaagggagctccttcttt 434
>40370_rco-MIR319d:mirbase
Length = 187
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctccttcttt 194
|||||||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccttcttt 186
>41637_vvi-MIR319e:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 tttggactgaagggagctcct 189
|||||||||||||||||||||
Sbjct: 76 tttggactgaagggagctcct 96
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgtttggactgaagggagctcc 188
||||| |||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctcc 169
>41282_ctr-MIR319:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgtttggactgaagggagctcc 188
||||| |||||||||||||||||||
Sbjct: 151 ctgtgcttggactgaagggagctcc 175
>41236_csi-MIR319:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 tttggactgaagggagctcct 189
|||||||||||||||||||||
Sbjct: 90 tttggactgaagggagctcct 110
>41164_aqc-MIR159:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 tgtttggactgaagggagctc 187
|||||||||||||||||||||
Sbjct: 48 tgtttggactgaagggagctc 68
>41129_tcc-MIR319:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 tttggactgaagggagctcct 189
|||||||||||||||||||||
Sbjct: 93 tttggactgaagggagctcct 113
>41411_ptc-MIR319h:mirbase
Length = 195
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>41408_ptc-MIR319e:mirbase
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 141 ttggactgaagggagctcct 160
