miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 394 bits (199), Expect = e-109
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
Query: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgataaatttaaaccgcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgataaatttaaaccgcagt 120
Query: 121 gactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaag 180
Query: 181 ggagctccttctttttcta 199
|||||||||||||||||||
Sbjct: 181 ggagctccttctttttcta 199
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 222 bits (112), Expect = 1e-57
Identities = 180/200 (90%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaacaagaagagggtagaaac 60
Query: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgata-aatttaaaccgcag 119
||||||||||||||||||||||||||| ||||| | | | ||| | |||| ||| |||
Sbjct: 61 atctgccgactcatccatccaaacacttctggtaaaaagaaaatagattttataccacag 120
Query: 120 tgactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaa 179
|| |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 121 tggctgtgtgaatgatgcgggagat-gttttcatctctctttatctgtgtttggactgaa 179
Query: 180 gggagctccttctttttcta 199
||||||||||||||| ||||
Sbjct: 180 gggagctccttctttatcta 199
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 95.6 bits (48), Expect = 2e-19
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 120 tgactgtgtgaatgatgcgggagatatttttg-atccttctttatctgtgtttggactga 178
||||||| ||||||||||||||||||||||| |||| ||||| |||||| |||||||||
Sbjct: 110 tgactgtatgaatgatgcgggagatatttttacatccatctttctctgtgcttggactga 169
Query: 179 agggagctccttcttt 194
||||||||||||||||
Sbjct: 170 agggagctccttcttt 185
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 81.8 bits (41), Expect = 3e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atccttctttatctgtgtttggactg 177
|||| ||| |||||||||||||||||| ||||| |||| ||||| || ||| ||||||||
Sbjct: 120 gtgattgtatgaatgatgcgggagataattttgcatccctctttttccgtgcttggactg 179
Query: 178 aagggagctccttcttt 194
|||||||||||||||||
Sbjct: 180 aagggagctccttcttt 196
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 69.9 bits (35), Expect = 1e-11
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| ||||| || || |||||| |||||||
Sbjct: 122 gtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggact 181
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 182 gaagggagctccttc 196
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 69.9 bits (35), Expect = 1e-11
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| |||| ||||| |||||| |||||||
Sbjct: 120 gtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggact 179
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 180 gaagggagctccttc 194
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 69.9 bits (35), Expect = 1e-11
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| |||||||||||||||||||||| ||| || ||||| || |||||| ||||||||
Sbjct: 117 gtgaatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgcttggactg 176
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 177 aagggagctcc 187
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 61.9 bits (31), Expect = 3e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||||||||||| || ||| |||||| | || |||||| ||||||||
Sbjct: 110 gtgaatgtgtgaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactg 169
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 170 aagggagctcc 180
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 154 ccttctttatctgtgtttggactgaagggagctccttcttt 194
|||||||| || ||||||||||||||||||||||||||||
Sbjct: 132 ccttctttggctatgtttggactgaagggagctccttcttt 172
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 54.0 bits (27), Expect = 8e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 101 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 160
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 161 aagggagctcc 171
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 54.0 bits (27), Expect = 8e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||||||||||| || ||| ||| |||| || ||| || ||||||||
Sbjct: 115 gtgaatgtgtgaatgatgcgggagctaaatttcatctttctcttgtctttgcttggactg 174
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 175 aagggagctcc 185
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 63/72 (87%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatc--cttctttatctgtgtttggact 176
|||| |||||||||||||||||||||| ||| ||| |||| || |||||| |||||||
Sbjct: 116 gtgaatgtgtgaatgatgcgggagata-atttcatcttcttc-ttgtctgtgcttggact 173
Query: 177 gaagggagctcc 188
||||||||||||
Sbjct: 174 gaagggagctcc 185
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctccttcttt 194
|||||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccttcttt 192
