miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40077_ath-MIR394a:mirbase
Length = 117
Score = 232 bits (117), Expect = 5e-62
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtgtatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtgtatata 60
Query: 61 tatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgttag 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgttag 117
>39867_aly-MIR394a:mirbase
Length = 220
Score = 119 bits (60), Expect = 5e-28
Identities = 102/117 (87%), Gaps = 8/117 (6%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtgtatata 60
||||||| |||||||||||||||||||||||||| || ||||| |||| ||||
Sbjct: 55 cttacagacatctttggcattctgtccacctcctcctgtacat--------gtgtgtata 106
Query: 61 tatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgttag 117
|||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tatatgtgttttgtgtggaagaaggaggtgggtatactgccaatagagatctgttag 163
>40078_ath-MIR394b:mirbase
Length = 121
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 83 aggaggtgggtatactgccaatagagatctgttag 117
|||||||||| ||||||||||||||||||||||||
Sbjct: 87 aggaggtgggcatactgccaatagagatctgttag 121
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcct 34
>39868_aly-MIR394b:mirbase
Length = 160
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 28 cttacagagatctttggcattctgtccacctcct 61
>42000_osa-MIR394:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tctttggcattctgtccacctcctt 35
|||||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcctt 35
>41776_bdi-MIR394:mirbase
Length = 200
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tctttggcattctgtccacctcctt 35
|||||||||||||||||||||||||
Sbjct: 50 tctttggcattctgtccacctcctt 74
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctt 35
||||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcctt 23
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctt 35
||||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcctt 42
>42789_zma-MIR394a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcct 41
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcct 58
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcct 58
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 37 tttggcattctgtccacctcc 57
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 37 tttggcattctgtccacctcc 57
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 20 tttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 34 tttggcattctgtccacctcc 54
>40402_ahy-MIR394:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 21 tttggcattctgtccacctcc 41
>42790_zma-MIR394b:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41239_csi-MIR394:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 17 ttggcattctgtccacctcc 36
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 43 ttggcattctgtccacctcc 62
>40472_gma-MIR394b:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 13 ttggcattctgtccacctcc 32
>40471_gma-MIR394a:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 39 ttggcattctgtccacctcc 58
