miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40078_ath-MIR394b:mirbase
Length = 121
Score = 240 bits (121), Expect = 2e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
Query: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
Query: 121 g 121
|
Sbjct: 121 g 121
>39868_aly-MIR394b:mirbase
Length = 160
Score = 89.7 bits (45), Expect = 4e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgta 53
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 28 cttacagagatctttggcattctgtccacctcctctctctatatgtatatgta 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaatagagatctgttag 121
|||||||| |||| |||||| |||||||||||||
Sbjct: 100 ggaggtggacatattgccaacagagatctgttag 133
>40077_ath-MIR394a:mirbase
Length = 117
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 87 aggaggtgggcatactgccaatagagatctgttag 121
|||||||||| ||||||||||||||||||||||||
Sbjct: 83 aggaggtgggtatactgccaatagagatctgttag 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagtcatctttggcattctgtccacctcct 34
>39867_aly-MIR394a:mirbase
Length = 220
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctc 35
|||||||| ||||||||||||||||||||||||||
Sbjct: 55 cttacagacatctttggcattctgtccacctcctc 89
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 87 aggaggtgggcatactgccaatagagatctgttag 121
|||||||||| ||||||||||||||||||||||||
Sbjct: 129 aggaggtgggtatactgccaatagagatctgttag 163
>42000_osa-MIR394:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 agagatctttggcattctgtccacctcct 34
|||| ||||||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcct 34
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 77 ggaggtgggcatactgccaat 97
>41776_bdi-MIR394:mirbase
Length = 200
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 agagatctttggcattctgtccacctcct 34
|||| ||||||||||||||||||||||||
Sbjct: 45 agagctctttggcattctgtccacctcct 73
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 126 ggaggtgggcatactgccaat 146
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcc 33
||||||||| | |||||||||||||||||||||
Sbjct: 25 cttacagagttttttggcattctgtccacctcc 57
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcc 33
||||||||| | |||||||||||||||||||||
Sbjct: 25 cttacagagttttttggcattctgtccacctcc 57
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>42789_zma-MIR394a:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctctc 37
||||||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcctctc 44
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaat 108
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||||| | |||||||||||||||||||||
Sbjct: 25 cttacagagtttattggcattctgtccacctcct 58
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||||| | |||||||||||||||||||||
Sbjct: 25 cttacagagtttattggcattctgtccacctcct 58
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 90 ggaggtgggcatactgccaa 109
>42790_zma-MIR394b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 84 ggaggtgggcatactgccaat 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcct 22
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 54 ggaggtgggcatactgccaat 74
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcct 41
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>41239_csi-MIR394:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcc 33
||||||||| | ||||||||||||||||||||
Sbjct: 4 cttacagagtttattggcattctgtccacctcc 36
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 106 ggaggtgggcatactgccaa 125
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 20 tttggcattctgtccacctcc 40
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcc 33
||||||||| | ||||||||||||||||||||
Sbjct: 8 cttacagagtttattggcattctgtccacctcc 40
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 79 ggaggtgggcatactgccaa 98
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 34 tttggcattctgtccacctcc 54
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcc 33
||||||||| | ||||||||||||||||||||
Sbjct: 30 cttacagagtttattggcattctgtccacctcc 62
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 106 ggaggtgggcatactgccaa 125
>40402_ahy-MIR394:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 21 tttggcattctgtccacctcc 41
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 62 ggaggtgggcatactgccaa 81
>40472_gma-MIR394b:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 13 ttggcattctgtccacctcc 32
>40471_gma-MIR394a:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 39 ttggcattctgtccacctcc 58
