miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 atgtcctctagagttctcctgaacacttcattggaaatttgttattcagtaagctaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtcctctagagttctcctgaacacttcattggaaatttgttattcagtaagctaacag 60
Query: 61 ttaattccactgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaattccactgaagtgtttgggggaactcccgatgtcat 100
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 tccactgaagtgtttgggggaactcccg 93
||||||||||||||||||||||||||||
Sbjct: 59 tccactgaagtgtttgggggaactcccg 86
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||||| ||||||
Sbjct: 57 actgaagtgtttgggggaactcccggtgtcat 88
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 attccactgaagtgtttgggggaactc 90
|||||||||||||||||||||||||||
Sbjct: 43 attccactgaagtgtttgggggaactc 69
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 attccactgaagtgtttgggggaactc 90
|||||||||||||||||||||||||||
Sbjct: 43 attccactgaagtgtttgggggaactc 69
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 67 ccactgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||||| | ||||||
Sbjct: 66 ccactgaagtgtttgggggaactcctggtgtcat 99
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccg 93
|||||||||||||||||||||||||
Sbjct: 64 actgaagtgtttgggggaactcccg 88
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccg 93
|||||||||||||||||||||||||
Sbjct: 60 actgaagtgtttgggggaactcccg 84
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||| | ||||||
Sbjct: 71 actgaagtgtttgggggaactcctggtgtcat 102
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||| | ||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtcat 103
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttgggggaactcc 91
||||||||||||||||||||||||
Sbjct: 67 cactgaagtgtttgggggaactcc 90
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||| | ||||||
Sbjct: 63 actgaagtgtttgggggaactcctggtgtcat 94
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ctgaagtgtttgggggaactcccg 93
||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcccg 87
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||| | ||||||
Sbjct: 57 actgaagtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcccgatgtcat 100
||||||||||||||||||||||| | ||||||
Sbjct: 57 actgaagtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;ABIM01010538.1/1971-1885 3649:Carica papaya
(papaya)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tccactgaagtgtttgggggaac 88
|||||||||||||||||||||||
Sbjct: 53 tccactgaagtgtttgggggaac 75
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 70 ctgaagtgtttgggggaactcccgatgtcat 100
|||||||||||||||||||||| | ||||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtgtcat 95
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttgggggaactc 90
|||||||||||||||||||||||
Sbjct: 82 cactgaagtgtttgggggaactc 104
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcc 91
|||||||||||||||||||||||
Sbjct: 60 actgaagtgtttgggggaactcc 82
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcc 91
|||||||||||||||||||||||
Sbjct: 61 actgaagtgtttgggggaactcc 83
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcc 91
|||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactcc 85
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactcc 91
|||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactcc 85
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactc 90
||||||||||||||||||||||
Sbjct: 59 actgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactc 90
||||||||||||||||||||||
Sbjct: 59 actgaagtgtttgggggaactc 80
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactc 90
||||||||||||||||||||||
Sbjct: 55 actgaagtgtttgggggaactc 76
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 actgaagtgtttgggggaactc 90
||||||||||||||||||||||
Sbjct: 78 actgaagtgtttgggggaactc 99
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ctgaagtgtttgggggaactcc 91
||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcc 81
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ctgaagtgtttgggggaactcc 91
||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcc 82
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ctgaagtgtttgggggaactcc 91
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ctgaagtgtttgggggaactcc 91
||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcc 86
