miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;AL161536.2/165502-165396 3702:Arabidopsis thaliana
(thale cress)
Length = 107
Score = 212 bits (107), Expect = 7e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
Query: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttc 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttc 107
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
|||||||||||||||||||||| |||||||||||||| | | || | || |||||||||
Sbjct: 1 tgaatgaacatcattgagtgcagcgttgatgtaattt--cgttttgtttttcattgttga 58
Query: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttc 107
|| |||||| | | |||| ||||||||| |||||||||||||||
Sbjct: 59 atggattaaaagaatttataccagcgttgcgctcaattatgtttttc 105
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 6 gaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttgaattaa 65
||||||||||||||||| ||||||||| | ||||||||| || || ||||||||||| |
Sbjct: 6 gaacatcattgagtgcagcgttgatgtga-tttacttatctt-tttcattgttgaatgga 63
Query: 66 ttaaag 71
||||||
Sbjct: 64 ttaaag 69
