miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40091_ath-MIR398c:mirbase
Length = 115
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
Query: 61 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 115
>40090_ath-MIR398b:mirbase
Length = 116
Score = 190 bits (96), Expect = 2e-49
Identities = 112/116 (96%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1 tggatctcgacagggttgatatgagaacacacgagtaatcaacggctgtaatgacgctac 60
Query: 61 gtcattgttacagctctcg-tttcatgtgttctcaggtcacccctgctgagctctt 115
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcattgttacagctctcgttttcatgtgttctcaggtcacccctgctgagctctt 116
>39883_aly-MIR398c:mirbase
Length = 132
Score = 119 bits (60), Expect = 5e-28
Identities = 107/119 (89%), Gaps = 4/119 (3%)
Strand = Plus / Plus
Query: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctat-aacgacgcta 59
|||||||||||||||| || ||||||||| | ||||||||||||||| | || |||||||
Sbjct: 6 tggatctcgacagggtcgacatgagaacatatgagcaatcaacggctgtaaatgacgcta 65
Query: 60 cgtcattgttacagctctc-gtttcatgtgtt--ctcaggtcacccctgctgagctctt 115
||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 66 cgtcattattacatctctcggtttcatgtgttaactcaggtcacccctgctgagctctt 124
>39882_aly-MIR398b:mirbase
Length = 142
Score = 91.7 bits (46), Expect = 1e-19
Identities = 96/115 (83%), Gaps = 12/115 (10%)
Strand = Plus / Plus
Query: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
||||||||||||||||||||||||| ||||| | | ||||||||||| ||| ||||| ||
Sbjct: 19 tggatctcgacagggttgatatgaggacacatgtgtaatcaacggctgtaatgacgccac 78
Query: 61 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 115
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 79 gtcattgtta------------catgtgttctcaggtcacccctgctgagctctt 121
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcacccctgctga 109
||||||||||||||||| ||||||||||
Sbjct: 59 tcatgtgttctcaggtcgcccctgctga 86
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcacccctgctg 108
||||||||||||||||| |||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgctg 81
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcacccctgctg 108
||||||||||||||||| |||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgctg 81
>40382_rco-MIR398b:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 80 tttcatgtgttctcaggtcacccctgc 106
||||||||||||||||||| |||||||
Sbjct: 96 tttcatgtgttctcaggtcgcccctgc 122
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ttcatgtgttctcaggtcacccctgc 106
|||||||||||||||||| |||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgc 77
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccctgctga 109
|||||||||||||| ||||||||||
Sbjct: 62 tgtgttctcaggtcgcccctgctga 86
>42039_osa-MIR398a:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>41800_bdi-MIR398b:mirbase
Length = 163
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 101 tgtgttctcaggtcacccct 120
>41665_vvi-MIR398a:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccct 92
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 catgtgttctcaggtcacccctgc 106
|||||||||||||||| |||||||
Sbjct: 66 catgtgttctcaggtcgcccctgc 89
>41445_ptc-MIR398a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccct 99
>41245_csi-MIR398:mirbase
Length = 225
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 132 tgtgttctcaggtcacccct 151
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 catgtgttctcaggtcacccctgc 106
|||||||||||||||| |||||||
Sbjct: 70 catgtgttctcaggtcgcccctgc 93
>41190_aqc-MIR398a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccct 85
>41145_tcc-MIR398b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 125 tgtgttctcaggtcacccct 144
>41078_gra-MIR398:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccct 85
>41059_ghr-MIR398:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccct 85
>40728_mtr-MIR398a:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccct 92
>40479_gma-MIR398b:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 96 tgtgttctcaggtcacccct 115
>40478_gma-MIR398a:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>40403_ahy-MIR398:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 129 tgtgttctcaggtcacccct 148
>40381_rco-MIR398a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccct 85
>40308_bol-MIR398a:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 71 tgtgttctcaggtcacccct 90
>40089_ath-MIR398a:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
>39881_aly-MIR398a:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 122 tgtgttctcaggtcacccct 141
