miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 226 bits (114), Expect = 5e-59
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 ggagcagtaatagggcatctttctattggcaggcgacttggctatttgtatcttttgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggagcagtaatagggcatctttctattggcaggcgacttggctatttgtatcttttgtgt 61
Query: 61 tcttgactattggctatgtcacttgccaaaggagagttgccctgtcactgcttc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcttgactattggctatgtcacttgccaaaggagagttgccctgtcactgcttc 115
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 81 acttgccaaaggagagttgccctgt 105
|||||||||||||||||||||||||
Sbjct: 70 acttgccaaaggagagttgccctgt 94
>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
(castor bean)
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 82 cttgccaaaggagagttgccctgtcactgctt 113
||||||||||||||| |||||||| |||||||
Sbjct: 83 cttgccaaaggagagctgccctgtgactgctt 114
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 cttgccaaaggagagttgccctgt 105
||||||||||||||||||||||||
Sbjct: 62 cttgccaaaggagagttgccctgt 85
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 cttgccaaaggagagttgccctgt 105
||||||||||||||||||||||||
Sbjct: 61 cttgccaaaggagagttgccctgt 84
>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 81 acttgccaaaggagagttgccctgtcactgcttc 114
|||||||||||||||| |||||||| | ||||||
Sbjct: 100 acttgccaaaggagagctgccctgtgattgcttc 133
>RF00445;mir-399;CAAP02003948.1/3813-3690 29760:Vitis vinifera
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 gccaaaggagagttgccctgtcactgcttc 114
||||||||||||||||||||| ||| ||||
Sbjct: 95 gccaaaggagagttgccctgtgactacttc 124
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 tgccaaaggagagttgccctgt 105
||||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctgt 93
