miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40108_ath-MIR408:mirbase
Length = 218
Score = 391 bits (197), Expect = e-109
Identities = 211/218 (96%)
Strand = Plus / Plus
Query: 1 aaggttagattggtattgcaatgaaagaagacaaagcggtaatgagagagagacagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggttagattggtattgcaatgaaagaagacaaagcggtaatgagagagagacagggaa 60
Query: 61 caagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctaccca 120
Query: 121 tgcactgcctcttccctggctccctcnnnnnnnctctatatttctctctctcctttcatt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccctctttttttctctatatttctctctctcctttcatt 180
Query: 181 tcacagctttcaatggaattttattgctactgctaacg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacagctttcaatggaattttattgctactgctaacg 218
>39897_aly-MIR408:mirbase
Length = 211
Score = 218 bits (110), Expect = 1e-57
Identities = 139/148 (93%), Gaps = 8/148 (5%)
Strand = Plus / Plus
Query: 1 aaggttagattggtattgcaatgaaagaagacaaagcggtaatga--gagagagacaggg 58
|||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 2 aaggttagattggtattgcaatgaaagaagt------ggtaatgatagagagagacaggg 55
Query: 59 aacaagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctacc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 aacaagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctacc 115
Query: 119 catgcactgcctcttccctggctccctc 146
||||||||||||||||||||||||||||
Sbjct: 116 catgcactgcctcttccctggctccctc 143
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 154 ctctatatttctctctctcctttcatttca 183
|||| ||||||| |||||||||||||||||
Sbjct: 172 ctctctatttctttctctcctttcatttca 201
>41463_ptc-MIR408:mirbase
Length = 105
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 104 tgttttgtctctacccatgcactgcctcttccctggct 141
||||||| ||||||||||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>41683_vvi-MIR408:mirbase
Length = 107
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 103 ctgttttgtctctacccatgcactgcctcttccctggctc 142
||||||| |||||||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
>40391_rco-MIR408:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 102 tctgttttgtctctacccatgcactgcctcttccctggct 141
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 49 tctgttttggctctacccctgcactgcctcttccctggct 88
>41252_csi-MIR408:mirbase
Length = 153
Score = 60.0 bits (30), Expect = 7e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142
|||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 101 ctctgttttggctcctcccatgcactgcctcttccctggctc 142
>42465_sof-MIR408d:mirbase
Length = 215
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 acccatgcactgcctcttccctggctccc 144
|||| ||||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctccc 200
>42647_tae-MIR408:mirbase
Length = 187
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctccc 160
>42464_sof-MIR408c:mirbase
Length = 286
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctccc 271
>42463_sof-MIR408b:mirbase
Length = 286
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctccc 271
>42462_sof-MIR408a:mirbase
Length = 283
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctccc 268
>42052_osa-MIR408:mirbase
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctccc 177
>41193_aqc-MIR408:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 118 ccatgcactgcctcttccctggct 141
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>40405_ahy-MIR408:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggctc 142
||||||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctc 103
>40404_ahy-MIR408:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggctc 142
||||||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctc 103
>42829_zma-MIR408:mirbase
Length = 191
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctcc 143
|||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctcc 175
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 acccatgcactgcctcttccctggctc 142
|||| ||||||||||||||||||||||
Sbjct: 154 acccctgcactgcctcttccctggctc 180
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggct 141
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>39428_pta-MIR408:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 atgcactgcctcttccctggctc 142
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>42830_zma-MIR408b:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctc 142
||||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggctc 147
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctc 142
||||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggctc 248
>39742_smo-MIR408:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 atgcactgcctcttccctggct 141
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>42600_sbi-MIR408:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggct 141
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>42466_sof-MIR408e:mirbase
Length = 283
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctccc 144
||||||| ||||||||||||||||
Sbjct: 245 tgcactgactcttccctggctccc 268
