miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01018570.1/9896-10057 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  204 bits (103), Expect = 3e-52
 Identities = 143/155 (92%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||| ||||||| ||||||||||||| |||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagtatttttcacattcatattgatttta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 98  atgaatctagatagatatatatgtctagattcattaatatcaatatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||| ||||| |||||||||||||| ||||
Sbjct: 38  ttagaatgacttaca-ttgtgaaacggagggagta 5



 Score =  125 bits (63), Expect = 2e-28
 Identities = 133/155 (85%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||| |||||  | ||||||||||||| |||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctaacatttcccacattcatattgatatta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | |||||||||||| |||||||||||||||  |||| 
Sbjct: 65  atgaatctagacatatatatctatctagattcattaaaatcaatatgaatgtgaaaaata 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AY749345.1/542-381 40148:Oryza glumipatula
          Length = 162

 Score =  204 bits (103), Expect = 3e-52
 Identities = 143/155 (92%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| 
Sbjct: 65  atgaatctagatagatatatatgtctacattcattaacatcaatatgaatgtgggaaata 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||| ||||| |||||||||||||||||||
Sbjct: 125 ttagaatgacttaca-ttgtgaaacggaggaagta 158



 Score =  143 bits (72), Expect = 9e-34
 Identities = 136/156 (87%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||| ||||| ||||||  ||||  | ||||||||||||||||
Sbjct: 159 ctacttcctccgtttcacaatgtaagtcattctaatatttcccacattcatattgatgtt 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||| |||| | |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 99  aatgaatgtagacatatatatctatctagattcattaacatcaatatgaatgtgggaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| |||||||||||||| ||||
Sbjct: 39  gctagaatgacttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AACV01008600.1/18829-18668 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  188 bits (95), Expect = 2e-47
 Identities = 141/155 (90%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| || |||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct: 158 tactccctccgttccacaatataagtcattctagcatttttcacattcatattgatatta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 98  atgaatctaaatagatatatatgtctagattcattaacaccaatataaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggagggagta 5



 Score =  127 bits (64), Expect = 6e-29
 Identities = 134/156 (85%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||||||||  | |||| |||||| ||||
Sbjct: 4   ctactccctccgtttcacaatgtaagtcattctagcatttcccacatttatattggtgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| | |||||| | |||||||||||||| |||||||||||||||  ||||
Sbjct: 64  aatgaatctagacatatatatctatttagattcattaatatcaatatgaatgtgaaaaat 123

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||| | ||||| |||||||| ||||
Sbjct: 124 gctagaatgacttata-ttgtggaacggagggagta 158




>RF00906;MIR1122;AAAA02010835.1/20211-20372 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  188 bits (95), Expect = 2e-47
 Identities = 141/155 (90%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| |||||||||||| || |||||||||||||  ||
Sbjct: 5   tacttcctccgtttcacaatataagtcattctagcatttctcacattcatattgatacta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 65  atgaatctagatagatatatatgtctagattcattagcatcaatatgaatgtggtaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||| ||||| |||||||||||||| ||||
Sbjct: 125 ttagaatgacttaca-ttgtgaaacggagggagta 158



 Score =  135 bits (68), Expect = 2e-31
 Identities = 135/156 (86%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| |||||| |||||  | |||||||||||||| |
Sbjct: 159 ctactccctccgtttcacaatgtaagtcattctaacatttaccacattcatattgatgct 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| | |||||| | | |||||||||||  ||||||||||||||| |||||
Sbjct: 99  aatgaatctagacatatatatctatctagattcattagtatcaatatgaatgtgagaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||| | |||||||||||||||||||
Sbjct: 39  gctagaatgacttata-ttgtgaaacggaggaagta 5




>RF00906;MIR1122;AP003303.4/1543-1382 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  188 bits (95), Expect = 2e-47
 Identities = 144/159 (90%), Gaps = 1/159 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||| | ||| |||||||||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcattttccacatccatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| 
Sbjct: 65  atgaatctagatagatatatatgtctagattcattaacaacaatatgaatgtgggaaata 124

                                                  
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatatg 171
            |||||||| ||||| |||||||||||||| ||||||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagtatatg 162



 Score =  149 bits (75), Expect = 2e-35
 Identities = 136/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||| ||||  | ||||||||||| |||||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagtatttcccacattcatattgttgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | |||||||||||||||||||||| |||||| |||||
Sbjct: 98  atgaatctagacatatatatctatctagattcattaacatcaatatggatgtggaaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggaggaagta 5




>RF00906;MIR1122;AAAA02019037.1/4499-4338 39946:Oryza sativa Indica
           Group
          Length = 162

 Score =  180 bits (91), Expect = 4e-45
 Identities = 140/155 (90%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||| |||||| | ||||||||||||| |||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctaacattttccacattcatattgatatta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 98  atgaatctaaatagatatatatgtctagattcattaacatcactatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggagggagta 5



 Score =  167 bits (84), Expect = 6e-41
 Identities = 139/156 (89%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||||||||  | |||||||| |||||||
Sbjct: 4   ctactccctccgtttcacaatgtaagtcattctagcatttcccacattcatagtgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| | |||||| | |||||||||||||| |||||||||||||||| ||||
Sbjct: 64  aatgaatctagacatatatatctatttagattcattaatatcaatatgaatgtggaaaat 123

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||| ||||| |||||||||||||| ||||
Sbjct: 124 gttagaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AACV01003962.1/1704-1543 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  178 bits (90), Expect = 2e-44
 Identities = 142/158 (89%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||||||| ||||| ||||||||||||  | ||||||||||||||
Sbjct: 161 tactacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatg 102

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct: 101 ttaatgaatctagataaatatatatgtatagattcattaacatcaatatgaatatggaaa 42

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 41  atgctagaatgacttaca-ttgtgaaacggagggagta 5



 Score =  172 bits (87), Expect = 1e-42
 Identities = 139/155 (89%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||| |  ||||||||||||||||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagcattttccatattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| | | |||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 65  atgaatctatacatatatatttatctagattcattaacatcaatatgaatgtgggaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||||||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggaggaagta 158




>RF00906;MIR1122;AP008216.1/349835-349994 39947:Oryza sativa
           Japonica Group
          Length = 160

 Score =  176 bits (89), Expect = 7e-44
 Identities = 141/156 (90%), Gaps = 3/156 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||||||||  | |||| |||||||||||
Sbjct: 157 ctactccctccgtttcacaatgtaagtcattctagcattt--cacatttatattgatgtt 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 99  aataaatctatatagatatatatgtctagattcattaacatcaatatgaatatgggaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | | |||||| ||||| |||||||||||||| ||||
Sbjct: 39  gcttgaatgacttaca-ttgtgaaacggagggagta 5



 Score =  121 bits (61), Expect = 3e-27
 Identities = 134/156 (85%), Gaps = 3/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| |||| |||||||  |  |||||||||||||||
Sbjct: 4   ctactccctccgtttcacaatgtaagtcattcaagcatttcccatattcatattgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| | |||||| | | |||||| |||||||||||||| |||||  |||||
Sbjct: 64  aatgaatctagacatatatatctatatagatttattaacatcaatataaatgt--gaaat 121

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| |||||||||||||| ||||
Sbjct: 122 gctagaatgacttaca-ttgtgaaacggagggagta 156




>RF00906;MIR1122;AC145127.1/349994-349835 39947:Oryza sativa
           Japonica Group
          Length = 160

 Score =  176 bits (89), Expect = 7e-44
 Identities = 141/156 (90%), Gaps = 3/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||||||||  | |||| |||||||||||
Sbjct: 4   ctactccctccgtttcacaatgtaagtcattctagcattt--cacatttatattgatgtt 61

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 62  aataaatctatatagatatatatgtctagattcattaacatcaatatgaatatgggaaat 121

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | | |||||| ||||| |||||||||||||| ||||
Sbjct: 122 gcttgaatgacttaca-ttgtgaaacggagggagta 156



 Score =  121 bits (61), Expect = 3e-27
 Identities = 134/156 (85%), Gaps = 3/156 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| |||| |||||||  |  |||||||||||||||
Sbjct: 157 ctactccctccgtttcacaatgtaagtcattcaagcatttcccatattcatattgatgtt 98

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| | |||||| | | |||||| |||||||||||||| |||||  |||||
Sbjct: 97  aatgaatctagacatatatatctatatagatttattaacatcaatataaatgt--gaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| |||||||||||||| ||||
Sbjct: 39  gctagaatgacttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AP003770.3/99658-99497 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  174 bits (88), Expect = 3e-43
 Identities = 140/156 (89%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| | ||||||| ||||| ||||||||||||  | ||||||||||||| ||
Sbjct: 159 ctactccctccgtatcacaatgtaagtcattctagcatttcccacattcatattgatatt 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 99  aatgaatctagatagatatatatgtctagattcattaacatcaatataaatgtgggaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           |  | ||||| ||||| |||||||||||||||||||
Sbjct: 39  gcaaaaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  125 bits (63), Expect = 2e-28
 Identities = 133/155 (85%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||| | ||||||  | |||| ||||||||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcatttttgcatttcccacatttatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | |||||||||||| ||||||||||||||||||||||
Sbjct: 65  atgaatctagacatatatatctatctagattcattaatatcaatatgaatgtgggaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||| ||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttgtgatacggagggagta 158




>RF00906;MIR1122;AP003211.3/16612-16773 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  174 bits (88), Expect = 3e-43
 Identities = 140/156 (89%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||||||||| ||| ||||||||  | |||||||||| |||||
Sbjct: 159 ctacttcctccgtttcacaatataagtcattttagcatttcccacattcatattaatgtt 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 99  aatgaatctagatagatatatatgtctagattcattaacatcaatatgaatgtgggtaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | || ||||| ||||| |||||||||||||| ||||
Sbjct: 39  gctataatgacttaca-ttgtgaaacggagggagta 5



 Score =  147 bits (74), Expect = 6e-35
 Identities = 138/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||||||| ||||||||| ||||| ||| |||||||   | ||||||||||||||
Sbjct: 2   tactactccctccgtttcacaatgtaagtcattatagcattacccacattcatattgatg 61

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||||||| | |||||| | | ||||||||||||||| ||||||||||||||||
Sbjct: 62  ttaatgaatctagacatatatatctatctagattcattaacattaatatgaatgtgggaa 121

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| || ||||| ||| | |||||||||||||||||||
Sbjct: 122 atgctaaaatgacttata-ttgtgaaacggaggaagta 158




>RF00906;MIR1122;AP004132.3/69953-70114 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  172 bits (87), Expect = 1e-42
 Identities = 139/155 (89%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||| ||||||||| | |||||||||| || |||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattatagcattttccacattcatatttatatta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           |||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 65  ataaatttagctaaatatatatgtctagattcattaacatcaatatgaatgtgggaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagta 158



 Score =  123 bits (62), Expect = 9e-28
 Identities = 135/158 (85%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||
Sbjct: 160 actactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgt 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||| | |||||| |   || ||| ||||| || ||||||||||||| |||
Sbjct: 100 taatgaatctagacatatatatttagctaaatttattaatataaatatgaatgtggaaaa 41

                                                 
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagtat 168
           || || ||||| ||||| |||||||||||||| |||||
Sbjct: 40  tgctataatgacttaca-ttgtgaaacggagggagtat 4




>RF00906;MIR1122;AAAA02032176.1/1934-1774 39946:Oryza sativa Indica
           Group
          Length = 161

 Score =  170 bits (86), Expect = 4e-42
 Identities = 142/158 (89%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||| ||||| |||||||||||||  |||  | ||||||||||||| |||
Sbjct: 5   tactccctccgttttacaatgtaagttattctagt-tttcccacattcatattgatatta 63

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| 
Sbjct: 64  atgaatctagatagatatatatgtctagattcattaacatcaatatgaatgtggaaaata 123

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
           ||||||||| ||||| |||||||||||||| |||||||
Sbjct: 124 ttagaatgacttaca-ttgtgaaacggagggagtatat 160



 Score =  123 bits (62), Expect = 9e-28
 Identities = 104/118 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||  ||||| | |||||||||||||||||
Sbjct: 157 tactccctccgtttcacaatgtaagtcattctaatattttccacattcatattgatgtta 98

                                                                     
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           || |||||||| | |||||| | | |||||||||||| ||||||||||||||||||||
Sbjct: 97  atgaatctagacatatatatctatctagattcattaatatcaatatgaatgtgggaaa 40




>RF00906;MIR1122;AC137070.2/83200-83361 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  168 bits (85), Expect = 2e-41
 Identities = 124/137 (90%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  | ||||||||||| |||||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgttgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 65  atgaatctagatagatatatatgtctagattcattaccatcaatatgaatgtgggaaatg 124

                            
Query: 133 ttagaatgatttacatt 149
            | |||||| |||||||
Sbjct: 125 gtggaatgacttacatt 141



 Score =  133 bits (67), Expect = 9e-31
 Identities = 137/159 (86%), Gaps = 1/159 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||| ||| ||||| ||| ||||| |||| | |||||  | ||||||||||||||
Sbjct: 161 tactactccttccgtttcataatgtaagtcattccaccatttcccacattcatattgatg 102

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
            |||| |||||||| | |||||| | | |||||||||||||| |||||||||||||||||
Sbjct: 101 gtaatgaatctagacatatatatctatctagattcattaacaacaatatgaatgtgggaa 42

                                                  
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||| |||||||| ||||| |||||||||||||| |||||
Sbjct: 41  atgctagaatgacttaca-ttgtgaaacggagggagtat 4




>RF00906;MIR1122;AP008212.1/28388180-28388020 39947:Oryza sativa
           Japonica Group
          Length = 161

 Score =  165 bits (83), Expect = 3e-40
 Identities = 139/155 (89%), Gaps = 2/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  atgaatctagc-acatacatatgtttagattcattaacatcaatatgaatgtgggaaatg 123

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 124 ctagaatgacttaca-ttgtgaaacggagggagta 157



 Score =  157 bits (79), Expect = 6e-38
 Identities = 138/155 (89%), Gaps = 2/155 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 157 tactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 98

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| | | || ||| ||  |||||||||||||||||||||||||||||||||||
Sbjct: 97  atgaatctaaacatatgtatgtg-ctagattcattaacatcaatatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggaggaagta 5




>RF00906;MIR1122;AC111015.2/7663-7824 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  165 bits (83), Expect = 3e-40
 Identities = 138/155 (89%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||||||||||||  | ||||||||||||| |||
Sbjct: 158 tactccctccgtttcacaatataagtcattctagcatttcccacattcatattgatatta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||| |||||| | | ||||||||||||||| ||||||||||||| ||| |
Sbjct: 98  atgaatctagatatatatatttatctagattcattaacattaatatgaatgtggaaaaag 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||| ||| | |||||||||||||||||||
Sbjct: 38  ttagaatgacttata-ttgtgaaacggaggaagta 5



 Score =  163 bits (82), Expect = 1e-39
 Identities = 140/158 (88%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||||||||||||| |||||| | |||| | |||||||||| |||
Sbjct: 2   tactacttcctccgtttcacaatataagtcattctaactttttccacattcatattaatg 61

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||||||||| |||||||| | |||||||||||| |||||||||||||||||||
Sbjct: 62  ttaatgaatctagataaatatatatatctagattcattaatatcaatatgaatgtgggaa 121

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| |||||||| ||| | |||||||||||||| ||||
Sbjct: 122 atgctagaatgacttata-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AC134344.2/22133-22294 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  165 bits (83), Expect = 3e-40
 Identities = 138/155 (89%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| |||||||||||| || |||||||||    ||||
Sbjct: 158 tacttcctccgtttcacaatgtaagtcattctagcatttctcacattcatatattagtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 98  atgaatctagatagatatatatgtctagattcattaatatcaatatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 38  atagaatgacttaca-ttgtgaaacggagggagta 5



 Score =  127 bits (64), Expect = 6e-29
 Identities = 134/156 (85%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||| |||||  | ||||||||||||| |||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctatcatttcccacattcatattgatatta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | |||||||||||||    ||||||||||| ||||||
Sbjct: 65  atgaatctagacatatatatctatctagattcattaactaatatatgaatgtgagaaatg 124

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||||| ||||||||||||||||||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggaggaagtat 159




>RF00906;MIR1122;AL731582.2/110020-109911 39947:Oryza sativa
           Japonica Group
          Length = 110

 Score =  165 bits (83), Expect = 3e-40
 Identities = 101/107 (94%)
 Strand = Plus / Plus

                                                                       
Query: 35  aagttattctagcatttttcgcattcatattgatgttaataaatctagatagatatatat 94
           |||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct: 1   aagtcattctagcatttctcacattcatattgatgttaatgaatctagatagatatatat 60

                                                          
Query: 95  gtttagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61  gtctagattcattaacatcaatatgaatgtgggaaatgctagaatga 107



 Score =  117 bits (59), Expect = 5e-26
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                       
Query: 35  aagttattctagcatttttcgcattcatattgatgttaataaatctagatagatatatat 94
           |||| ||||||||||||  | ||||||||||||||||||| |||||||| | |||||| |
Sbjct: 110 aagtcattctagcatttcccacattcatattgatgttaatgaatctagacatatatatct 51

                                                          
Query: 95  gtttagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
            | |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 50  atctagattcattaacatcaatatgaatgtgagaaatgctagaatga 4




>RF00906;MIR1122;AAAA02033830.1/7365-7526 39946:Oryza sativa Indica
           Group
          Length = 162

 Score =  159 bits (80), Expect = 2e-38
 Identities = 138/156 (88%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||| ||| ||||||||| ||||| |||||| ||||| || |||||||||||||||||
Sbjct: 5   tactccttccgtttcacaatgtaagtcattctaccatttctcacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| |||||||||||| ||||| |||||| | | |||||
Sbjct: 65  atgaatctagatagatatatatgtctagattcattaatatcaacatgaatttagaaaatg 124

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||||| |||||||||||||| |||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagtat 159



 Score =  135 bits (68), Expect = 2e-31
 Identities = 129/148 (87%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||||||||||    |||||| ||||| |||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcattttctaaattcatgttgatatta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | |||||||||||||||||||||||||||| ||||||
Sbjct: 98  atgaatctagacatatatatctatctagattcattaacatcaatatgaatgtgagaaatg 39

                                       
Query: 133 ttagaatgatttacatttgtgaaacgga 160
            |||||||| ||||| ||||||||||||
Sbjct: 38  gtagaatgacttaca-ttgtgaaacgga 12




>RF00906;MIR1122;AP006533.3/146933-147094 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  157 bits (79), Expect = 6e-38
 Identities = 137/155 (88%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||||||| || |||||||||||||||||||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcatattccgcattcatattgatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||| |||| |  ||||| | | ||||||||||||||||||||||||| | |||||||
Sbjct: 98  atgaatatagacatctatatctatctagattcattaacatcaatatgaatataggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  143 bits (72), Expect = 9e-34
 Identities = 136/156 (87%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||     ||||||||||||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcctatattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||||||||| |||| || ||||||||||||||||||||||| || | |||
Sbjct: 65  atgaatctagatagatatagatgtctatattcattaacatcaatatgaatgcggaatatg 124

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||||| |||||||||||||| |||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagtat 159




>RF00906;MIR1122;AC082645.13/91702-91541 4530:Oryza sativa (rice)
          Length = 162

 Score =  157 bits (79), Expect = 6e-38
 Identities = 137/155 (88%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||  ||||||||||||||| |||| ||||||||| ||
Sbjct: 158 tactccctccgtttcacaatataagccattctagcatttttcacatttatattgatgata 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | ||||||||||||||| |||||||||||||||||||
Sbjct: 98  atgaatctagacatatatatctatctagattcattaacataaatatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| ||| | |||||||||||||||||||
Sbjct: 38  ctacaatgacttata-ttgtgaaacggaggaagta 5



 Score =  147 bits (74), Expect = 6e-35
 Identities = 138/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||||||||| ||| ||||||||  | |||||||||| |||||
Sbjct: 4   ctacttcctccgtttcacaatataagtcattgtagcatttcccacattcatatttatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||  ||||
Sbjct: 64  aatgaatctagatagatatatatgtctagattcattatcatcaatataaatgtgaaaaat 123

                                                 
Query: 132 gttagaatgatttacatttgtgaaacggaggaagtata 169
           | |||||||  ||| | |||||||||||||| ||||||
Sbjct: 124 gctagaatggcttata-ttgtgaaacggagggagtata 160




>RF00906;MIR1122;AP005879.3/69009-69170 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  155 bits (78), Expect = 2e-37
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||||||||||||| |||||||||||||    ||||||||||||| 
Sbjct: 160 actactccctccgtttcacaatataagtcattctagcattttctatattcatattgatgc 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||| | |||||| | | |||| ||||||||||||||| |||||||| |||
Sbjct: 100 taatgaatctagacatatatatctatctagagtcattaacatcaatacgaatgtggaaaa 41

                                                 
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagtat 168
           || |||||||| ||||| ||||||||||||||||||||
Sbjct: 40  tgctagaatgacttaca-ttgtgaaacggaggaagtat 4



 Score =  149 bits (75), Expect = 2e-35
 Identities = 136/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||| | ||||| |||||||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcattttccacattcgtattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || | ||||||||||||||||||| ||||||||||| ||||||||||||| | | |||||
Sbjct: 65  atgactctagatagatatatatgtctagattcattagcatcaatatgaatatagaaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||| | |||||||||||||| ||||
Sbjct: 125 ctagaatgacttata-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AAAA02028244.1/12095-12254 39946:Oryza sativa
           Indica Group
          Length = 160

 Score =  153 bits (77), Expect = 1e-36
 Identities = 138/156 (88%), Gaps = 3/156 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||||| |||||||| | ||||||
Sbjct: 156 tactccctccgtttcacaatgtaagtcattctagcatttttcacattcatactcatgtta 97

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||  |||||||||| || |||||||||||| | |||||||||||||||||
Sbjct: 96  atgaatctagat--atatatatgtctaaattcattaacatgagtatgaatgtgggaaatg 39

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
             ||||||| ||| | ||||||||||||||||||||
Sbjct: 38  ccagaatgacttata-ttgtgaaacggaggaagtat 4



 Score =  103 bits (52), Expect = 8e-22
 Identities = 131/155 (84%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||||| ||||||  | |||||||| | ||||||
Sbjct: 5   tacttcctccgtttcacaatataagtcattctggcatttcccacattcatactcatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||| |||| | |||||||| |  |||||||||||||| | ||||||||||  |||||
Sbjct: 65  atgaatttagacatatatatatct--agattcattaacatgagtatgaatgtgaaaaatg 122

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 123 ctagaatgacttaca-ttgtgaaacggagggagta 156




>RF00906;MIR1122;AP005295.3/50213-50374 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  153 bits (77), Expect = 1e-36
 Identities = 138/157 (87%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||||||| ||||| ||||||||||| | | |||||||||| ||||
Sbjct: 160 actactccctccgtttcacaatgtaagtcattctagcattctccacattcatattaatgt 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||| | |||||| | | ||||||||||||||  |||||||||||||||||
Sbjct: 100 taatgaatctagacatatatatctatctagattcattaacactaatatgaatgtgggaaa 41

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           || || ||||| ||||| |||||||||||||||||||
Sbjct: 40  tgctaaaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  149 bits (75), Expect = 2e-35
 Identities = 136/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||| ||||||||  | ||||||||||  |||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattttagcatttcccacattcatattagtgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||
Sbjct: 65  atgaatctagatagatatatatgtctagattcattaacattaatatgaatgtggagaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AP005125.3/150901-150749 39947:Oryza sativa
           Japonica Group
          Length = 153

 Score =  151 bits (76), Expect = 4e-36
 Identities = 136/156 (87%), Gaps = 10/156 (6%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||||||||  | ||||||||||||||||
Sbjct: 150 ctactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtt 91

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||||         |||| ||||||||||||||||||||||||||||||||||
Sbjct: 90  aatgaatctaga---------atgtctagattcattaacatcaatatgaatgtgggaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| |||||||||||||||||||
Sbjct: 39  gctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  123 bits (62), Expect = 9e-28
 Identities = 134/158 (84%), Gaps = 10/158 (6%)
 Strand = Plus / Plus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||||||| ||||| ||||||||||||  | ||||||||||||||
Sbjct: 2   tactacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatg 61

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||||||| |          | ||||||||||||||||||||||||||||||||
Sbjct: 62  ttaatgaatctagacat---------tctagattcattaacatcaatatgaatgtgggaa 112

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 113 atgctagaatgacttaca-ttgtgaaacggagggagta 149




>RF00906;MIR1122;AACV01021520.1/23851-23690 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  149 bits (75), Expect = 2e-35
 Identities = 139/159 (87%), Gaps = 1/159 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gtactactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           |||||||||||||| ||||||||| ||||| ||| ||| ||||  | |||| ||||||||
Sbjct: 162 gtactactccctccgtttcacaatctaagtcattttagaatttcccacattaatattgat 103

                                                                       
Query: 69  gttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtggga 128
           | |||| |||||||| | |||||| | | ||||||||||||| |||||||||||||||||
Sbjct: 102 ggtaatgaatctagaaatatatatctatctagattcattaacgtcaatatgaatgtggga 43

                                                  
Query: 129 aatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 42  aatgctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  141 bits (71), Expect = 4e-33
 Identities = 135/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||| ||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgacgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||| 
Sbjct: 65  atgaatctagatagatatatatttctagattcattaccatcaatattaatgtgggaaatt 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| ||| | |||||||||||||| ||||
Sbjct: 125 ctaaaatgacttaga-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AAAA02033049.1/305-466 39946:Oryza sativa Indica
           Group
          Length = 162

 Score =  149 bits (75), Expect = 2e-35
 Identities = 136/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||| | |||||||||||||||||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcattttccacattcatattgatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||   |||||||||  ||||||||||| |||| ||||||||||||  ||||
Sbjct: 98  atgaatctagacttatatatatgcctagattcattagcatctatatgaatgtggacaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            ||||||||  |||| |||||||||||||||||||
Sbjct: 38  ctagaatgacataca-ttgtgaaacggaggaagta 5



 Score =  133 bits (67), Expect = 9e-31
 Identities = 134/155 (86%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| || || ||||||||||| | | ||||||||| |||| ||
Sbjct: 5   tacttcctccgtttcacaatgtatgtcattctagcattgtccacattcatatagatgcta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||  | ||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 65  atgaatctaggcatatatataagtctagattcattaacatcaatatgaatgtggaaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AAAA02042348.1/276-116 39946:Oryza sativa Indica
           Group
          Length = 161

 Score =  149 bits (75), Expect = 2e-35
 Identities = 137/155 (88%), Gaps = 2/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| |||| |||| ||||| |||||||||||| || |||||||||||||| ||
Sbjct: 5   tacttcctccgtttcgcaatgtaagtcattctagcatttctcacattcatattgatggta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||||| |||||| | ||||||||||||||| ||||| ||| |||||||||
Sbjct: 65  atgaatctagataga-atatatatctagattcattaacattaatataaatatgggaaatg 123

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||| ||||| |||||||||||||| ||||
Sbjct: 124 ttagaatgacttaca-ttgtgaaacggagggagta 157



 Score =  123 bits (62), Expect = 9e-28
 Identities = 136/158 (86%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||||||| ||||| |||||| |||||  |  ||| ||||| ||||
Sbjct: 159 actactccctccgtttcacaatgtaagtcattctaacatttcccatatttatattaatgt 100

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||||| |||| | | | ||||||||||| |||||||||||||||| ||||
Sbjct: 99  taatgaatctagatatatat-tctatctagattcattaccatcaatatgaatgtgagaaa 41

                                                 
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagtat 168
           || |||||||| ||||| ||| ||||||||||||||||
Sbjct: 40  tgctagaatgacttaca-ttgcgaaacggaggaagtat 4




>RF00906;MIR1122;AP005467.3/75230-75071 39947:Oryza sativa Japonica
           Group
          Length = 160

 Score =  149 bits (75), Expect = 2e-35
 Identities = 139/158 (87%), Gaps = 3/158 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| || |||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 156 tactccctccgttccacaatgtaagtcattctagcatttcccacattcatattgatgtta 97

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||  | |||||||||| || |||||||||||||||||||||||| | |||||
Sbjct: 96  atgaatctag--acatatatatgtctacattcattaacatcaatatgaatgtagaaaatg 39

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
            |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttgtggaacggaggaagtatat 2



 Score =  143 bits (72), Expect = 9e-34
 Identities = 136/155 (87%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| || |||||| ||||| |||||||||||||   |||||||||||||||||
Sbjct: 5   tacttcctccgttccacaatgtaagtcattctagcattttctacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||| |||| |  ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 65  atgaatgtagaca--tatatatgtctagattcattaacatcaatatgaatgtgggaaatg 122

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| ||||| |||||||| ||||
Sbjct: 123 ctagaatgacttaca-ttgtggaacggagggagta 156




>RF00906;MIR1122;AACV01009613.1/23372-23263 39947:Oryza sativa
           Japonica Group
          Length = 110

 Score =  149 bits (75), Expect = 2e-35
 Identities = 99/107 (92%)
 Strand = Plus / Minus

                                                                       
Query: 35  aagttattctagcatttttcgcattcatattgatgttaataaatctagatagatatatat 94
           |||| ||||||||||||  | ||||||||||||||||||| |||||| ||||||||||||
Sbjct: 110 aagtcattctagcatttcccacattcatattgatgttaatgaatctaaatagatatatat 51

                                                          
Query: 95  gtttagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 50  gtctagattcattaacatcaatatgaatgtgggaaatgctagaatga 4



 Score =  133 bits (67), Expect = 9e-31
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                       
Query: 35  aagttattctagcatttttcgcattcatattgatgttaataaatctagatagatatatat 94
           |||| ||||||||||||  | ||||||||||||||||||| |||||||| | |||||| |
Sbjct: 1   aagtcattctagcatttcccacattcatattgatgttaatgaatctagacatatatatct 60

                                                          
Query: 95  gtttagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
            ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61  atttagattcattaacatcaatatgaatgtgggaaatgctagaatga 107




>RF00906;MIR1122;CR855160.1/93205-93044 4530:Oryza sativa (rice)
          Length = 162

 Score =  147 bits (74), Expect = 6e-35
 Identities = 138/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||| |||||||| || ||| |||||||||| |
Sbjct: 159 ctactccctccgtttcacaatgtaagtcattttagcatttctcacatccatattgatgct 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| | ||||||  || |||||||||||| || | ||||||||||||||||
Sbjct: 99  aatgaatctagacatatatatccgtctagattcattaatataagtatgaatgtgggaaat 40

                                                 
Query: 132 gttagaatgatttacatttgtgaaacggaggaagtata 169
           | |||||||| ||||| |||||||||||||||||||||
Sbjct: 39  gctagaatgacttaca-ttgtgaaacggaggaagtata 3



 Score =  125 bits (63), Expect = 2e-28
 Identities = 133/155 (85%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||| | || |||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatacttatatta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||  ||||||||||| ||||||||||| |||||||||| ||||| ||||||
Sbjct: 65  atgaatctagacggatatatatgtctagattcattagcatcaatatggatgtgagaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| ||||| |||||||||||||| ||||
Sbjct: 125 ctaaaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AP004224.3/123495-123660 39947:Oryza sativa
           Japonica Group
          Length = 166

 Score =  147 bits (74), Expect = 6e-35
 Identities = 139/159 (87%), Gaps = 5/159 (3%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatat----tgat 68
           |||| ||||| ||||||||| ||||| ||||||||||||  |  |||||||     ||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcgcatattcatacatagtgat 64

                                                                       
Query: 69  gttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtggga 128
           |||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 65  gttaatgaatctagatagatatatatgtctagattcattaacatcactatgaatgtggga 124

                                                  
Query: 129 aatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 125 aatgctagaatgacttaca-ttgtgaaacggagggagta 162



 Score =  129 bits (65), Expect = 1e-29
 Identities = 139/162 (85%), Gaps = 5/162 (3%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||||||| ||||||||| ||||| ||||||||||||  | |||||||| |||||
Sbjct: 165 tactactccctccgtttcacaatgtaagtcattctagcatttcccacattcatagtgatg 106

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatca----atatgaatgtg 125
           ||||| |||||||| | |||||| | | |||||||||||||||||     ||||||| ||
Sbjct: 105 ttaatgaatctagacatatatatctatctagattcattaacatcactatgtatgaatatg 46

                                                     
Query: 126 ggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
            |||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 45  cgaaatgctagaatgacttaca-ttgtgaaacggaggaagta 5




>RF00906;MIR1122;AC123528.2/111745-111906 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  145 bits (73), Expect = 2e-34
 Identities = 137/157 (87%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||| |||||    |   |||||||||||
Sbjct: 4   ctactccctccgtttcacaatgtaagtcattctagtattttcactagaaatattgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 64  aatgaatctagatagatatatatgtctagattcattaatatcaatatgaatgtgggaaat 123

                                                
Query: 132 gttagaatgatttacatttgtgaaacggaggaagtat 168
             |||||||  ||||| |||||||||||||| |||||
Sbjct: 124 actagaatgtcttaca-ttgtgaaacggagggagtat 159



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 91/106 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||  ||||||| ||||  | ||||||||||||| |||
Sbjct: 158 tactccctccgtttcacaatgtaagacattctagtatttcccacattcatattgatatta 99

                                                         
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatat 118
           || |||||||| | |||||| | | |||||||||||||||||||||
Sbjct: 98  atgaatctagacatatatatctatctagattcattaacatcaatat 53




>RF00906;MIR1122;AC084405.6/111503-111664 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  145 bits (73), Expect = 2e-34
 Identities = 137/157 (87%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| ||||| || |||| ||||||| ||||||| ||||| |  ||||||||||||| 
Sbjct: 3   actacttcctccgttccacagtataagtcattctagtattttccatattcatattgatgc 62

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| ||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct: 63  taatgaatttagatagatatatatgtttagattcattagcatcaatatgaatatgagaaa 122

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||| ||| | ||||| |||||||| ||||
Sbjct: 123 tgttagaatgacttata-ttgtggaacggagggagta 158



 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 130/156 (83%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| || |||||||||||| |||||| ||||| ||  ||||||||||||| |
Sbjct: 159 ctactccctccgttccacaatataagtcattctaacatttctcatattcatattgatgct 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||| | | |||||| | | || |||||||| ||||||||||||| ||| ||||
Sbjct: 99  aatgaatctaaacatatatatctatctaaattcattagcatcaatatgaatatggaaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
             |||||||| ||| |  |||| |||||||||||||
Sbjct: 39  actagaatgacttata-ctgtggaacggaggaagta 5




>RF00906;MIR1122;AP008217.1/27688043-27688204 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  145 bits (73), Expect = 2e-34
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||| | ||||||||| | |||||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcattttccacattcatataggtgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| |  ||||||| | |||||||||||||| | ||||||||||||||||||
Sbjct: 98  atgaatctagacatctatatatatctagattcattaacacctatatgaatgtgggaaatg 39

                            
Query: 133 ttagaatgatttacatt 149
           ||||||||| |||||||
Sbjct: 38  ttagaatgacttacatt 22



 Score =  121 bits (61), Expect = 3e-27
 Identities = 134/157 (85%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||| ||| || || ||| ||||| |||||| |||||  | ||||||||| | |||
Sbjct: 3   actactccttccgttccataatgtaagtcattctaacatttcccacattcatataggtgt 62

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||||| ||||| |||| |||||||||||||| | |||||||||||| |||
Sbjct: 63  taatgaatctagatatatatagatgtctagattcattaacacctatatgaatgtggaaaa 122

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           || |||||||| ||||| |||||||||||||| ||||
Sbjct: 123 tgctagaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AP003999.3/94479-94320 39947:Oryza sativa Japonica
           Group
          Length = 160

 Score =  145 bits (73), Expect = 2e-34
 Identities = 137/156 (87%), Gaps = 3/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||||    ||||||  |||||||||||||||||||| || ||||||||||
Sbjct: 65  atgaatctagatag--gcatatgtccagattcattaacatcaatataaacgtgggaaatg 122

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||| | ||||||||||||||||||||
Sbjct: 123 ctagaatgacttata-ttgtgaaacggaggaagtat 157



 Score =  119 bits (60), Expect = 1e-26
 Identities = 133/155 (85%), Gaps = 3/155 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||||||||||||  | | || ||||||||||||
Sbjct: 156 tacttcctccgtttcacaatataagtcattctagcatttcccacgtttatattgatgtta 97

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||| || | ||   ||| |  ||||||||||||||||||||||||||||||||||
Sbjct: 96  atgaatctggacatatgcctatct--agattcattaacatcaatatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;CR855046.1/58437-58598 4530:Oryza sativa (rice)
          Length = 162

 Score =  143 bits (72), Expect = 9e-34
 Identities = 136/156 (87%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||| | ||||| ||| || ||||| || ||||||||| |||||||
Sbjct: 5   tactccctccgtttcacattgtaagtcattttatcatttctcacattcatatagatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| |  ||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct: 65  atgaatctagacatctatatatatttagattcatcaacatctatatgaatgtgggaaatg 124

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||||| |||||||||||||| |||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagtat 159



 Score =  133 bits (67), Expect = 9e-31
 Identities = 134/155 (86%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  | ||||||||| |||||| 
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcatttcccacattcatatagatgttg 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| ||| ||||| |||| |||||||||||||||| ||||||||||| ||||||
Sbjct: 98  atgaatctaaatatatatagatgtctagattcattaacatctatatgaatgtgagaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| |||||  ||||||||||||| ||||
Sbjct: 38  ataaaatgacttaca-atgtgaaacggagggagta 5




>RF00906;MIR1122;AAAA02016992.1/488-649 39946:Oryza sativa Indica
           Group
          Length = 162

 Score =  141 bits (71), Expect = 4e-33
 Identities = 135/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||||||||| || |||||||||| ||||||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcatttctcacattcatattaatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | ||||||     |||||||||||||||| |||||||| |||| ||||
Sbjct: 98  atgaatctagacatatatatccaactagattcattaacatccatatgaatatgggtaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  141 bits (71), Expect = 4e-33
 Identities = 135/155 (87%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| |||||||||||   |  |||||||| |||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcattacccatattcatatggatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||| | ||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 65  atgaatctagttggatatatatgtctagattcattaacattaatatgaatgtgagaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AACV01007439.1/3817-3972 39947:Oryza sativa
           Japonica Group
          Length = 156

 Score =  141 bits (71), Expect = 4e-33
 Identities = 137/158 (86%), Gaps = 7/158 (4%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||| ||| ||||| ||||||||||||  | ||||||||||||||| 
Sbjct: 153 ctactccctccgtttcataatgtaagtcattctagcatttcccacattcatattgatgtc 94

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||| ||||      || |||||||||| |||||||||||||||||||||||
Sbjct: 93  aatgaatctagacagat------gtctagattcattgacatcaatatgaatgtgggaaat 40

                                                 
Query: 132 gttagaatgatttacatttgtgaaacggaggaagtata 169
           | |||||||| ||||| |||||||||||||||||||||
Sbjct: 39  gatagaatgacttaca-ttgtgaaacggaggaagtata 3



 Score =  103 bits (52), Expect = 8e-22
 Identities = 130/155 (83%), Gaps = 7/155 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| |||||| |||||  | ||||||||||||||| |
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctatcatttcccacattcatattgatgtca 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| |      | ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 65  atgaatctagaca------tctgtctagattcattgacatcaatatgaatgtgggaaatg 118

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||| ||||
Sbjct: 119 ctagaatgacttaca-ttatgaaacggagggagta 152




>RF00906;MIR1122;AC145396.3/45626-45471 39947:Oryza sativa Japonica
           Group
          Length = 156

 Score =  141 bits (71), Expect = 4e-33
 Identities = 137/158 (86%), Gaps = 7/158 (4%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||||||| ||||||||||||||| ||||||||||||    ||||||||||||||
Sbjct: 155 tactactccctccgtttcacaatataagtcattctagcatttcctacattcatattgatg 96

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
            |||| |||||||| | |||| ||      ||||||||| ||||||||||||||||||||
Sbjct: 95  ctaatgaatctagacatatatcta------gattcattagcatcaatatgaatgtgggaa 42

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| |||||||| ||||| |||||||||||||||||||
Sbjct: 41  atgctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score =  119 bits (60), Expect = 1e-26
 Identities = 132/155 (85%), Gaps = 7/155 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||| ||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgcta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||      ||||| ||||||||||| ||||||||||||||| |||||||
Sbjct: 65  atgaatctagata------tatgtctagattcattagcatcaatatgaatgtaggaaatg 118

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||| | |||||||||||||| ||||
Sbjct: 119 ctagaatgacttata-ttgtgaaacggagggagta 152




>RF00906;MIR1122;AAAA02003204.1/17037-17198 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  139 bits (70), Expect = 1e-32
 Identities = 137/158 (86%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||||||  ||| ||| ||| |||||||||| ||
Sbjct: 158 tactccctccgtttcataatgtaagtcattctactattgttcacatccatattgatgcta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||||||| ||||||||||  |||| |||||||||||| |||||
Sbjct: 98  atgaatctagatagatatatatgtctagattcattggcatcgatatgaatgtggaaaatg 39

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
            |||||||| ||||| || ||||||||||| |||||||
Sbjct: 38  ctagaatgacttaca-ttatgaaacggagggagtatat 2



 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 129/155 (83%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||||||||||||| | ||||||||| ||||  |
Sbjct: 5   tactccctccgtttcataatgtaagtcattctagcattttccacattcatatcgatgcca 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | ||||||||||| |||||||||| |||||   ||| 
Sbjct: 65  atgaatctagacatatatatctatctagattcattagcatcaatatggatgtgaacaata 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||| ||||
Sbjct: 125 gtagaatgacttaca-ttatgaaacggagggagta 158




>RF00906;MIR1122;AP002866.1/46564-46725 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score =  139 bits (70), Expect = 1e-32
 Identities = 137/158 (86%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||||||| ||||||| ||| ||||| |||| ||
Sbjct: 158 tactccctccgtttcataatgtaagtcattctagtatttttcacatccatatcgatgcta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||| |||||||||| ||||||||||  |||| |||||||||||| |||||
Sbjct: 98  atgaatctagataaatatatatgtctagattcattggcatcgatatgaatgtggaaaatg 39

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
            |||||||| ||||| || ||||||||||| |||||||
Sbjct: 38  ctagaatgacttaca-ttatgaaacggagggagtatat 2



 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 129/155 (83%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||||||||||||| | ||||||||| ||||  |
Sbjct: 5   tactccctccgtttcataatgtaagtcattctagcattttccacattcatatcgatgcca 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||||| | | ||||||||||| |||| ||||| |||||  |||| 
Sbjct: 65  atgaatctagacatatatatttatctagattcattagcatcgatatggatgtgaaaaata 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||| ||||
Sbjct: 125 ctagaatgacttaca-ttatgaaacggagggagta 158




>RF00906;MIR1122;AAAA02019220.1/20048-19887 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  139 bits (70), Expect = 1e-32
 Identities = 137/158 (86%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||  ||||| ||| ||||||||  | |||| ||||||||||||
Sbjct: 158 tacttcctccgtttcacaaagtaagtcattttagcatttcccacatttatattgatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct: 98  atgaatctagatagaaatatatgtctagattcataaacatcaatataaatgtgggaaatg 39

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
             | ||||| |||| ||||||||||||||| |||||||
Sbjct: 38  caaaaatgacttac-tttgtgaaacggagggagtatat 2



 Score =  117 bits (59), Expect = 5e-26
 Identities = 132/155 (85%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||  ||||| ||| | ||||||  | |||| ||||||||||| 
Sbjct: 5   tactccctccgtttcacaaagtaagtcatttttgcatttcccacatttatattgatgttt 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | |||| | | | ||||||||||||||||||||| |||||||||||||
Sbjct: 65  atgaatctagacatatatttctatctagattcattaacatcaatataaatgtgggaaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| |||| ||||||||||||||||||||
Sbjct: 125 ctaaaatgacttac-tttgtgaaacggaggaagta 158




>RF00906;MIR1122;AP004812.3/16268-16113 39947:Oryza sativa Japonica
           Group
          Length = 156

 Score =  137 bits (69), Expect = 6e-32
 Identities = 135/156 (86%), Gaps = 7/156 (4%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| |||||||| |||| | ||||||||||||||||
Sbjct: 153 ctactccctccgtttcacaatgtaagtcattctagccttttccacattcatattgatgtt 94

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| | | |||||||||| |||||| |||||      |||||||||||||||||| ||||
Sbjct: 93  aatgagtttagatagatacatatgtctagat------acatcaatatgaatgtggaaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| |||||||||||||||||||
Sbjct: 39  gctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 129/155 (83%), Gaps = 7/155 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||| | |||||||||||||||  
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcattttccacattcatattgatgt-- 62

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
               ||||||| | || ||| | | || | |||||||||||||||||||||||| ||| |
Sbjct: 63  ----atctagacatatgtatctatctaaactcattaacatcaatatgaatgtggaaaagg 118

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 119 ctagaatgacttaca-ttgtgaaacggagggagta 152




>RF00906;MIR1122;AAAA02005426.1/1175-1330 39946:Oryza sativa Indica
           Group
          Length = 156

 Score =  129 bits (65), Expect = 1e-29
 Identities = 134/156 (85%), Gaps = 7/156 (4%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||| ||||||||||||| | ||||||||| ||||||
Sbjct: 4   ctactccctccgtttcacaatgtaagtcattctagcattttccacattcatatcgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| | | |||||||||| |||||| |||||      |||||||||||||| ||| ||||
Sbjct: 64  aatgagtttagatagatacatatgtctagat------acatcaatatgaatatggaaaat 117

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| |||||||||||||||||||
Sbjct: 118 gctagaatgacttaca-ttgtgaaacggaggaagta 152



 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 128/155 (82%), Gaps = 7/155 (4%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||| |  ||||||||||||||  
Sbjct: 152 tacttcctccgtttcacaatgtaagtcattctagcattttccatattcatattgatgt-- 95

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
               ||||||| | || ||| | | || | ||||||||||| |||||||||||| |||||
Sbjct: 94  ----atctagacatatgtatctatctaaactcattaacatcgatatgaatgtggaaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||| ||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AACV01013006.1/1091-1250 39947:Oryza sativa
           Japonica Group
          Length = 160

 Score =  127 bits (64), Expect = 6e-29
 Identities = 134/155 (86%), Gaps = 3/155 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| |||  |||| ||| ||||||||||| ||||||||| |||||||
Sbjct: 156 tactccctccgtttcataatgcaagtcattttagcatttttcacattcatatagatgtta 97

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||  |  |||||||||| | |||||||||||||| | ||||||||||||||||
Sbjct: 96  atgaatcta--tgcatatatatgtcttgattcattaacatctacatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| ||||| |||||||||||||||||||
Sbjct: 38  ctaaaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 131/158 (82%), Gaps = 3/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||||||| ||||| ||| ||||||||  | ||||||| | ||||
Sbjct: 2   tactacttcctccgtttcacaatgtaagtcattttagcatttcccacattcatgtagatg 61

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||| ||| |  ||||||||  |||||||||||||||| |||||||||||  ||
Sbjct: 62  ttaatgaatcaagaca--tatatatgcatagattcattaacatctatatgaatgtgaaaa 119

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| || ||||| || || || ||||||||||| ||||
Sbjct: 120 atgctaaaatgacttgca-ttatgaaacggagggagta 156




>RF00906;MIR1122;AAAA02014547.1/9044-9193 39946:Oryza sativa Indica
           Group
          Length = 150

 Score =  127 bits (64), Expect = 6e-29
 Identities = 133/157 (84%), Gaps = 13/157 (8%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||| | |||||||||||||||||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagcattttccacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           ||  |||||||||            ||||| |||||||||||||||||||||||||||||
Sbjct: 65  atgtatctagata------------tagatacattaacatcaatatgaatgtgggaaatg 112

                                                
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtata 169
            |||||||| ||||| ||||| |||||||||||||||
Sbjct: 113 ctagaatgacttaca-ttgtggaacggaggaagtata 148



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 68/74 (91%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct: 73  tagatacattaacatcaatatgaatgtggaaaatgctagaatgacttaca-ttgtgaaac 15

                         
Query: 158 ggaggaagtatatg 171
           ||||| ||||||||
Sbjct: 14  ggagggagtatatg 1




>RF00906;MIR1122;AAAA02007033.1/31416-31265 39946:Oryza sativa
           Indica Group
          Length = 152

 Score =  125 bits (63), Expect = 2e-28
 Identities = 134/158 (84%), Gaps = 11/158 (6%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           ||||||| || ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 148 tactccccccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 89

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||          |||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct: 88  atgaat----------atatatgtctagattcattaacattaatataaatgtgggaaatg 39

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
            |||||||| ||||| ||||||||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttgtgaaacggaggaagtatat 2



 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 122/147 (82%), Gaps = 11/147 (7%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||| ||||| ||||||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattctagcatttcccacatttatattaatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | ||||||          ||||||||||||||||||||||||||||||
Sbjct: 65  atgaatctagacatatatat----------tcattaacatcaatatgaatgtgggaaatg 114

                                      
Query: 133 ttagaatgatttacatttgtgaaacgg 159
            |||||||| ||||| |||||||||||
Sbjct: 115 ctagaatgacttaca-ttgtgaaacgg 140




>RF00906;MIR1122;AL606446.1/41078-41221 39947:Oryza sativa Japonica
           Group
          Length = 144

 Score =  123 bits (62), Expect = 9e-28
 Identities = 127/149 (85%), Gaps = 16/149 (10%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           ||||| |||| ||||||||| ||||| |||||||||||||       |||||||||||||
Sbjct: 143 tactctctccgtttcacaatgtaagtcattctagcatttt-------catattgatgtta 91

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 90  atgaatctagata--------tgtttagattcattaacatcaatatgaatgtgggaaatg 39

                                        
Query: 133 ttagaatgatttacatttgtgaaacggag 161
           ||||||||| ||||| |||||||||||||
Sbjct: 38  ttagaatgacttaca-ttgtgaaacggag 11



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          |||||| |||| ||||||||| ||||| |||||| |||||  | ||||||||||||||||
Sbjct: 4  ctactctctccgtttcacaatgtaagtcattctaacatttcccacattcatattgatgtt 63

                    
Query: 72 aataaatcta 81
          ||| ||||||
Sbjct: 64 aatgaatcta 73




>RF00906;MIR1122;AACV01023372.1/6803-6964 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  121 bits (61), Expect = 3e-27
 Identities = 126/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tccctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaata 75
           ||||||| ||||||||| ||||| |||||||||| | || ||||||||||||  |   | 
Sbjct: 8   tccctccgtttcacaatgtaagtcattctagcatntctcacattcatattgaaatcgntg 67

                                                                       
Query: 76  aatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgtta 135
           |||||||| | | |||||||| |||||||||| ||||||||||||||||| |||||| ||
Sbjct: 68  aatctagacatacatatatgtctagattcattgacatcaatatgaatgtgagaaatgcta 127

                                      
Query: 136 gaatgatttacatttgtgaaacggagg 162
           |||||| ||||| ||||||||||||||
Sbjct: 128 gaatgacttaca-ttgtgaaacggagg 153



 Score =  121 bits (61), Expect = 3e-27
 Identities = 126/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  tccctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaata 75
           ||||||| ||||||||| ||||| |||||||||||| || ||||||||||||||| ||| 
Sbjct: 155 tccctccgtttcacaatgtaagtcattctagcatttctcacattcatattgatgtcaatg 96

                                                                       
Query: 76  aatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgtta 135
           |||||||| | |||| ||||| ||||||||   |  |||||||||||||| || ||| ||
Sbjct: 95  aatctagacatatatgtatgtctagattcancgatttcaatatgaatgtgaganatgcta 36

                                      
Query: 136 gaatgatttacatttgtgaaacggagg 162
           |||||| ||||| ||||||||||||||
Sbjct: 35  gaatgacttaca-ttgtgaaacggagg 10




>RF00906;MIR1122;AP005729.3/123154-122993 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  121 bits (61), Expect = 3e-27
 Identities = 134/157 (85%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||| ||| ||||   ||||||||||  ||  |||||||| |||||
Sbjct: 160 actactccctccgtttcataatgtaagactttctagcattgctcatattcatatagatgt 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||| | |||||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 100 taatgaatctagacacatatatatgtctagattcattaacatctatatgaatgtgggcaa 41

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           |  ||||| || ||||| || ||||||||||||||||
Sbjct: 40  tactagaaagacttaca-ttatgaaacggaggaagta 5



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 95/112 (84%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||| | |||||| ||| |||||||||||||||| |
Sbjct: 48  cattcatatagatgttaatgaatctagacatatatatgtgtctagattcattaacatcta 107

                                                               
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||| || | |||| ||||| |  ||||| || ||||||||||| ||||
Sbjct: 108 tatgaatatgagcaatgctagaaagtcttaca-ttatgaaacggagggagta 158




>RF00906;MIR1122;AAAA02004628.1/54560-54721 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  119 bits (60), Expect = 1e-26
 Identities = 133/156 (85%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||| | ||||||||| |||| ||
Sbjct: 158 tactccctccgtttcacaatgtaagtcattctagcattttccacattcatatagatgcta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||| || | | ||||||  || ||||||||||| |||| |||||||| | | |||||
Sbjct: 98  atgaatttaaacatatatatgcgtatagattcattagcatctatatgaatatagaaaatg 39

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||||||| ||||| |||||||||||||| |||||
Sbjct: 38  ttagaatgacttaca-ttgtgaaacggagggagtat 4



 Score =  119 bits (60), Expect = 1e-26
 Identities = 133/156 (85%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||| ||||||    |||||||| |||| ||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctaacattttctatattcatatagatgcta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| |   ||||||||||||| |||||||| |||| |||||||||||| |||||
Sbjct: 65  atgaatctatacgcatatatatgtttaaattcattagcatctatatgaatgtggaaaatg 124

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||||| |||||||||||||| |||||
Sbjct: 125 ctagaatgacttaca-ttgtgaaacggagggagtat 159




>RF00906;MIR1122;AAAA02004745.1/86622-86461 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  115 bits (58), Expect = 2e-25
 Identities = 128/150 (85%), Gaps = 1/150 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||||||||||||     |||||||| || ||||
Sbjct: 5   tactccctccgtttcataatgtaagtcattctagcatttcctatattcatatagaggtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
            | |||||| |||||||||||||| |||||||| |||| || ||||||||||||||||||
Sbjct: 65  gtgaatctatatagatatatatgtctagattcactaacctccatatgaatgtgggaaatg 124

                                         
Query: 133 ttagaatgatttacatttgtgaaacggagg 162
            |||||||| ||||| || |||||||||||
Sbjct: 125 ctagaatgacttaca-ttatgaaacggagg 153



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 128/154 (83%), Gaps = 1/154 (0%)
 Strand = Plus / Minus

                                                                       
Query: 14  actccctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaa 73
           ||||||||| ||||| ||| ||||| ||||||||||||  | ||||||||| || |||| 
Sbjct: 157 actccctccgtttcataatgtaagtcattctagcatttcccacattcatatggaggttag 98

                                                                       
Query: 74  taaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgt 133
           | |||||||| | |||||| | | |||||||| |||| || |||||||| | ||||||| 
Sbjct: 97  tgaatctagacatatatatctatatagattcactaacctctatatgaatataggaaatgc 38

                                             
Query: 134 tagaatgatttacatttgtgaaacggaggaagta 167
           |||||||| ||||| || ||||||||||| ||||
Sbjct: 37  tagaatgacttaca-ttatgaaacggagggagta 5




>RF00906;MIR1122;AAAA02032259.1/26586-26696 39946:Oryza sativa
           Indica Group
          Length = 111

 Score =  115 bits (58), Expect = 2e-25
 Identities = 74/78 (94%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 81  tatatgtctagattcattaacatcaatatgaatgtgggaaatgctagaatgacttaca-t 23

                             
Query: 150 tgtgaaacggaggaagta 167
           ||||||||||||||||||
Sbjct: 22  tgtgaaacggaggaagta 5



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 64

                     
Query: 73 ataaatctaga 83
          || ||||||||
Sbjct: 65 atgaatctaga 75




>RF00906;MIR1122;AACV01004867.1/28532-28374 39947:Oryza sativa
           Japonica Group
          Length = 159

 Score =  113 bits (57), Expect = 8e-25
 Identities = 132/155 (85%), Gaps = 4/155 (2%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||||||| ||||  | |||||||||||||  ||
Sbjct: 5   tacttcctccgtttcacaatataagtcattctagtatttcccacattcatattgatacta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||||||||||   || ||||| ||||  |||||||||||||||||||||||
Sbjct: 65  atgaatctagatagatata---gtctagatccattggcatcaatatgaatgtgggaaatg 121

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            | |||||| ||||| || ||||||||||| ||||
Sbjct: 122 gtggaatgacttaca-ttatgaaacggagggagta 155



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 130/157 (82%), Gaps = 4/157 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||| ||| ||||| |||| | |||||  | |||||||||||||| 
Sbjct: 157 actactccctccgtttcataatgtaagtcattccaccatttcccacattcatattgatgc 98

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
            |||  |||||||    ||||| | | |||||||||||  ||||||||||||||||||||
Sbjct: 97  caatggatctagac---tatatctatctagattcattagtatcaatatgaatgtgggaaa 41

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           |  |||||||| ||| | |||||||||||||||||||
Sbjct: 40  tactagaatgacttata-ttgtgaaacggaggaagta 5




>RF00906;MIR1122;AC135419.2/12863-12720 39947:Oryza sativa Japonica
           Group
          Length = 144

 Score =  111 bits (56), Expect = 3e-24
 Identities = 75/80 (93%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 88  tatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttaca 147
           ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 83  tatatatgtctagattcattaacatcaatatgaatgtgggaaatgctagaatgacttaca 24

                               
Query: 148 tttgtgaaacggaggaagta 167
            |||||||||||||| ||||
Sbjct: 23  -ttgtgaaacggaggtagta 5



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 5  tactacctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 64

                     
Query: 73 ataaatctaga 83
          || ||||||||
Sbjct: 65 atgaatctaga 75



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                      
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||| ||||   ||||| |||||||| ||||||| |||||||||||||||||
Sbjct: 83  acatcaatatgtatgtacaaaatgctagaatgacttacatt-gtgaaacggaggaagta 140




>RF00906;MIR1122;AACV01021759.1/1958-2106 39947:Oryza sativa
           Japonica Group
          Length = 149

 Score =  111 bits (56), Expect = 3e-24
 Identities = 84/92 (91%), Gaps = 1/92 (1%)
 Strand = Plus / Minus

                                                                       
Query: 76  aatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgtta 135
           ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||
Sbjct: 95  aatctagatagatatatatgtctagattcattaacatcaatatgaatatgagaaatgcta 36

                                           
Query: 136 gaatgatttacatttgtgaaacggaggaagta 167
           |||||| ||||| || ||||||||||| ||||
Sbjct: 35  gaatgacttaca-ttatgaaacggagggagta 5



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||| ||| ||||| |||||||||||| ||  ||||||||||||||||
Sbjct: 5  tactccctccgtttcataatgtaagtcattctagcatttctcatattcatattgatgtta 64

                              
Query: 73 ataaatctagatagatatat 92
          || |||||||| | ||||||
Sbjct: 65 atgaatctagacatatatat 84




>RF00906;MIR1122;AACV01003595.1/12314-12153 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  111 bits (56), Expect = 3e-24
 Identities = 132/156 (84%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||| ||||||||| |  || ||||||||| ||||||
Sbjct: 159 ctacttcctccgtttcataatgtaagtcattctagcaatgctcacattcatatggatgtt 100

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||||| || | ||||| |||||||||||||||| |||||||| | || |||
Sbjct: 99  aatgaatctagatatatgtctatgtctagattcattaacatctatatgaatataggcaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| || ||||||||||| ||||
Sbjct: 39  gctagaatgacttaca-ttatgaaacggagggagta 5



 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 131/157 (83%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||| ||| ||||| |||||||||||      |||||||| |||||
Sbjct: 3   actactccctccgtttcataatgtaagtcattctagcattgcctatattcatatagatgt 62

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||| | | | |||| | |||||||||||||||| ||||||||||| | | 
Sbjct: 63  taatgaatctagacatagacatatatctagattcattaacatccatatgaatgtgagcat 122

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           || |||||||| ||||| || ||||||||||||||||
Sbjct: 123 tgctagaatgacttaca-ttatgaaacggaggaagta 158




>RF00906;MIR1122;AACV01011709.1/17498-17659 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  107 bits (54), Expect = 5e-23
 Identities = 133/158 (84%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||||||| ||||||||| ||||   | ||||||||  || ||||||||| ||||
Sbjct: 2   tactactccctccgtttcacaatgtaagacttcctagcattgctcacattcatatagatg 61

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||||||| | | |||||| | |||||||||||||||| || |||||||||| |
Sbjct: 62  ttaatgaatctagacacacatatatatctagattcattaacatctatgtgaatgtgggca 121

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||| || |  ||||| |||||||||||||| ||||
Sbjct: 122 atgttaaaaagtcttaca-ttgtgaaacggagggagta 158



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 129/157 (82%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||||||| ||||   || || ||||   | |||||| || |||||
Sbjct: 160 actactccctccgtttcacaatgtaagactttttaacattgcccacattcacatagatgt 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||||| |||| | ||| |||||||||||||||| ||||||||||| | ||
Sbjct: 100 taatgaatctagatatatatgtgtgtctagattcattaacatctatatgaatgtgagcaa 41

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           || ||| | |  ||||| |||||||||||||| ||||
Sbjct: 40  tgctaggaagtcttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AAAA02022474.1/18183-18335 39946:Oryza sativa
           Indica Group
          Length = 153

 Score =  107 bits (54), Expect = 5e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Plus

                                                                       
Query: 63  attgatgttaataaatctagatagatatatatgtttagattcattaacatcaatatgaat 122
           |||||||||||| |||||||||||||||||  || |||||||||||||||||||||||||
Sbjct: 48  attgatgttaatgaatctagatagatatat--gtctagattcattaacatcaatatgaat 105

                                                        
Query: 123 gtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
            ||||||||| || ||||| ||| | |||||||||||||| ||||
Sbjct: 106 atgggaaatgctaaaatgacttata-ttgtgaaacggagggagta 149



 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 90/104 (86%), Gaps = 2/104 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||| ||||||||  |  ||||||||||||||||
Sbjct: 149 tactccctccgtttcacaatataagtcattttagcatttcccatattcatattgatgtta 90

                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaat 116
           || |||||||  | |||||| | | |||||||||||||||||||
Sbjct: 89  atgaatctag--acatatatctatctagattcattaacatcaat 48




>RF00906;MIR1122;AP008217.1/8435064-8435202 39947:Oryza sativa
           Japonica Group
          Length = 139

 Score =  107 bits (54), Expect = 5e-23
 Identities = 76/82 (92%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                       
Query: 88  tatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttaca 147
           ||||||||| |||||||||||| || ||||||||||||||||||| |||||||| |||||
Sbjct: 57  tatatatgtctagattcattaatataaatatgaatgtgggaaatgctagaatgacttaca 116

                                 
Query: 148 tttgtgaaacggaggaagtata 169
            |||||||||||||||||||||
Sbjct: 117 -ttgtgaaacggaggaagtata 137



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                               
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatatt 65
          |||||||||||||||||||| ||||| ||||||||||||  | ||||||||||
Sbjct: 5  tactccctccatttcacaatgtaagtcattctagcatttcccacattcatatt 57



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||||
Sbjct: 57  aatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaatggagggagtat 4



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||| || |||
Sbjct: 135 tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatatttatatta 76

                      
Query: 73  ataaatctaga 83
           || ||||||||
Sbjct: 75  atgaatctaga 65




>RF00906;MIR1122;AP002524.2/113149-113010 39947:Oryza sativa
           Japonica Group
          Length = 140

 Score =  107 bits (54), Expect = 5e-23
 Identities = 67/70 (95%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 68  tagattcattaacatcaatatgaatgtgggaaatgttagaatgacttaca-ttgtgaaac 126

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 127 ggagggagta 136



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||| |||||  | |||||||||||||||||
Sbjct: 136 tactccctccgtttcacaatgtaagtcattctaacatttcccacattcatattgatgtta 77

                             
Query: 73  ataaatctagatagatat 90
           || |||||||||||||||
Sbjct: 76  atgaatctagatagatat 59



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 53/57 (92%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 60  atcaatatgaatatgggaaatgctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||| ||||| ||||||||| ||||| ||||||||||||  |  ||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttcccatattcatattgat 60




>RF00906;MIR1122;AAAA02014050.1/50727-50888 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  105 bits (53), Expect = 2e-22
 Identities = 132/157 (84%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||| ||||| ||| ||||| |||||||||||      |||||||| |||||
Sbjct: 160 actactccctccgtttcataatgtaagtcattctagcattgcctatattcatatagatgt 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||||| | | |||| | |||||||||||||||| ||||||||||| | | 
Sbjct: 100 taatgaatctagatatagacatatatctagattcattaacatccatatgaatgtgagcat 41

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           || |||||||| ||||| || ||||||||||||||||
Sbjct: 40  tgctagaatgacttaca-ttatgaaacggaggaagta 5



 Score =  103 bits (52), Expect = 8e-22
 Identities = 131/156 (83%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||| ||||||||| |  || ||||||||| ||||||
Sbjct: 4   ctacttcctccgtttcataatgtaagtcattctagcaatgctcacattcatatggatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||||| || | ||| | |||||||||||||||| |||||||| | || |||
Sbjct: 64  aatgaatctagatatatgtctatatctagattcattaacatctatatgaatataggcaat 123

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| || ||||||||||| ||||
Sbjct: 124 gctagaatgacttaca-ttatgaaacggagggagta 158




>RF00906;MIR1122;AC146937.2/33799-33900 39947:Oryza sativa Japonica
           Group
          Length = 102

 Score =  105 bits (53), Expect = 2e-22
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 40  attctagcatttttcgcattcatattgatgttaataaatctagatagatatatatgttta 99
           ||||||||||||| | ||||||||| | ||||||| |||||||| |  ||||||| | ||
Sbjct: 2   attctagcattttccacattcatataggtgttaatgaatctagacatctatatatatcta 61

                                                    
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatg 140
           |||||||||||| | ||||||||||||||||||||||||||
Sbjct: 62  gattcattaacacctatatgaatgtgggaaatgttagaatg 102



 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| | ||||||| |||||||||| ||||| |||| |||||||||||||| | |
Sbjct: 85  cattcatataggtgttaatgaatctagatatatatagatgtctagattcattaacaccta 26

                                    
Query: 116 tatgaatgtgggaaatgttagaatg 140
           ||||||||||| ||||| |||||||
Sbjct: 25  tatgaatgtggaaaatgctagaatg 1




>RF00906;MIR1122;AAAA02015039.1/73812-73973 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  105 bits (53), Expect = 2e-22
 Identities = 132/157 (84%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||   || |||||||  || ||||||||| |||||||
Sbjct: 5   tactccctccgtttcataatgtaagactttttagcattcctcacattcatatagatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | | |||||| | |||||||||||||||| ||||||||||||| ||||
Sbjct: 65  atgaatctagacacacatatatttctagattcattaacatctatatgaatgtgggcaatg 124

                                                
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtata 169
            ||||| |  ||||| || ||||||||||||||||||
Sbjct: 125 ctagaaagtcttaca-ttatgaaacggaggaagtata 160



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||| | |||| | ||| |||||||||||||||| |
Sbjct: 115 cattcatatagatgttaatgaatctagaaatatatgtgtgtctagattcattaacatcta 56

                     
Query: 116 tatgaatgtg 125
           ||||||||||
Sbjct: 55  tatgaatgtg 46




>RF00906;MIR1122;AACV01010647.1/16392-16231 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score =  105 bits (53), Expect = 2e-22
 Identities = 132/157 (84%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||   || |||||||  || ||||||||| |||||||
Sbjct: 158 tactccctccgtttcataatgtaagactttttagcattgctcacattcatatagatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | | |||||| | |||||||||||||||| ||||||||||||| ||||
Sbjct: 98  atgaatctagacacacatatatttctagattcattaacatctatatgaatgtgggcaatg 39

                                                
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtata 169
            ||||| |  ||||| || ||||||||||||||||||
Sbjct: 38  ctagaaagtcttaca-ttatgaaacggaggaagtata 3



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||| | |||| | ||| |||||||||||||||| |
Sbjct: 48  cattcatatagatgttaatgaatctagaaatatatgtgtgtctagattcattaacatcta 107

                     
Query: 116 tatgaatgtg 125
           ||||||||||
Sbjct: 108 tatgaatgtg 117




>RF00906;MIR1122;AAAA02034059.1/74410-74542 39946:Oryza sativa
           Indica Group
          Length = 133

 Score =  103 bits (52), Expect = 8e-22
 Identities = 83/91 (91%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                       
Query: 77  atctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttag 136
           ||||||||||||||||  || ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 42  atctagatagatatat--gtctagatccattaacatcaatatgaatgtgggaaatgctag 99

                                          
Query: 137 aatgatttacatttgtgaaacggaggaagta 167
           ||||| ||||| || ||||||||||||||||
Sbjct: 100 aatgacttaca-ttatgaaacggaggaagta 129



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||| ||||||||||||  | ||||||||||||||||
Sbjct: 130 ctacttcctccgtttcataatgtaagtcattctagcatttcccacattcatattgatgtt 71

                       
Query: 72  aataaatctaga 83
           |||  |||||||
Sbjct: 70  aatggatctaga 59




>RF00906;MIR1122;AAAA02015271.1/30648-30797 39946:Oryza sativa
          Indica Group
          Length = 150

 Score =  103 bits (52), Expect = 8e-22
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 5  tactccctccgtttcacaatgtaagttattctagcatttttcacattcatattgatgcta 64

                      
Query: 73 ataaatctagat 84
          || |||||||||
Sbjct: 65 atgaatctagat 76



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 65/73 (89%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||||||||||||||  ||||| |||||| | ||||| |||||||||
Sbjct: 73  tagattcattagcatcaatatgaatgtgaaaaatgctagaataacttaca-ttgtgaaac 15

                        
Query: 158 ggaggaagtatat 170
           ||||| |||||||
Sbjct: 14  ggagggagtatat 2




>RF00906;MIR1122;AP008214.1/11401129-11401273 39947:Oryza sativa
           Japonica Group
          Length = 145

 Score =  103 bits (52), Expect = 8e-22
 Identities = 65/68 (95%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgg 159
           ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 71  gattcattaacatcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacgg 13

                   
Query: 160 aggaagta 167
           ||||||||
Sbjct: 12  aggaagta 5



 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgg 159
           |||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||
Sbjct: 75  gattcattaacatcaatatgaatgtgagaaatgctagaatgaattaca-ttgtgaaacgg 133

                   
Query: 160 aggaagta 167
           ||| ||||
Sbjct: 134 agggagta 141



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 64

                 
Query: 73 ataaatc 79
          || ||||
Sbjct: 65 atgaatc 71




>RF00906;MIR1122;AAAA02010488.1/13895-13757 39946:Oryza sativa
           Indica Group
          Length = 139

 Score =  103 bits (52), Expect = 8e-22
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattgacatcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaac 15

                       
Query: 158 ggaggaagtata 169
           ||||||||||||
Sbjct: 14  ggaggaagtata 3



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                       
Query: 108 aacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||
Sbjct: 77  aacatcaatatgaatgtgggaaatgctagaatgacttaca-ttatgaaacggagggagta 135



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||||||||||||  | ||||||||||||||| |
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtca 64

                     
Query: 73 ataaatctaga 83
          || ||||||||
Sbjct: 65 atgaatctaga 75



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||| ||| ||||| ||||||||||||  | ||||||||||||||||
Sbjct: 136 ctactccctccgtttcataatgtaagtcattctagcatttcccacattcatattgatgtt 77




>RF00906;MIR1122;CR855156.1/56940-57078 4530:Oryza sativa (rice)
          Length = 139

 Score =  103 bits (52), Expect = 8e-22
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct: 67  tagattcattaacatcaatatgaatgtgggaaatgttagaatgacttata-ttgtgaaac 125

                       
Query: 158 ggaggaagtata 169
           ||||| ||||||
Sbjct: 126 ggagggagtata 137



 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| |||||| |||||  | |||||||||||||||||
Sbjct: 135 tactccctccgtttcacaatataagtcattctaacatttcccacattcatattgatgtta 76

                        
Query: 73  ataaatctagata 85
           || ||||||||||
Sbjct: 75  atgaatctagata 63



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct: 5  tacttcctccgtttcacaatataagtcattctagcattttccacattcatattgatgtta 64



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 56/61 (91%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                       
Query: 107 taacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagt 166
           |||||||||||||||||||| ||||| |||||||| ||| | ||||||||||||||||||
Sbjct: 64  taacatcaatatgaatgtggaaaatgctagaatgacttata-ttgtgaaacggaggaagt 6

            
Query: 167 a 167
           |
Sbjct: 5   a 5




>RF00906;MIR1122;AAAA02027999.1/42024-42185 39946:Oryza sativa
           Indica Group
          Length = 162

 Score =  101 bits (51), Expect = 3e-21
 Identities = 130/155 (83%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| |||||||||||   |  |||||||| |||||||
Sbjct: 158 tactccctccgtttcataatgtaagtcattctagcattacccatattcatatagatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | | || ||| | || ||||||||||||| ||||| ||||||| ||||
Sbjct: 98  atgaatctagacacacatctatatctaaattcattaacatctatatgtatgtgggcaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttatgaaacggaggaagta 5



 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 132/158 (83%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||| |||||||||||   | ||| ||||| ||||||
Sbjct: 4   ctacttcctccgtttcataatgtaagtcattctagcattgcccacatacatatagatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||| |||||| | || | ||| |||||||||||||||| |||||||| |||| |||
Sbjct: 64  aatgaatttagatatagatgtgtgtctagattcattaacatctatatgaatatgggtaat 123

                                                 
Query: 132 gttagaatgatttacatttgtgaaacggaggaagtata 169
           | |||||||| ||||| || ||||||||||| ||||||
Sbjct: 124 gctagaatgacttaca-ttatgaaacggagggagtata 160




>RF00906;MIR1122;AP008214.1/4654552-4654403 39947:Oryza sativa
           Japonica Group
          Length = 150

 Score =  101 bits (51), Expect = 3e-21
 Identities = 129/156 (82%), Gaps = 13/156 (8%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||| ||||||||||||| | ||||||||||||||||
Sbjct: 4   ctacttcctccgtttcataatgtaagtcattctagcattttccacattcatattgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||            ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 64  aatgaatcta------------tgtctagtttcattaacatcaatatgaatgtgggaaat 111

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| ||||||||| |||| ||||
Sbjct: 112 gctagaatgacttaca-ttgtgaaaccgagggagta 146



 Score =  101 bits (51), Expect = 3e-21
 Identities = 129/156 (82%), Gaps = 13/156 (8%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||  ||||||||| ||||| ||||||||||||  | ||||||||||||||||
Sbjct: 147 ctactccctcggtttcacaatgtaagtcattctagcatttcccacattcatattgatgtt 88

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| || ||||| |            ||||||||||||||||||||||||||||| ||||
Sbjct: 87  aatgaaactagaca------------tagattcattaacatcaatatgaatgtggaaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| || ||||||||||||||||
Sbjct: 39  gctagaatgacttaca-ttatgaaacggaggaagta 5




>RF00906;MIR1122;AAAA02022229.1/19711-19563 39946:Oryza sativa
           Indica Group
          Length = 149

 Score =  101 bits (51), Expect = 3e-21
 Identities = 128/155 (82%), Gaps = 14/155 (9%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||||||||| ||  ||| ||||||||||||
Sbjct: 145 tactccctccgtttcacaatgtaagtcattctagcatttctcatatttatattgatgtta 86

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           |||||||||||||||| |||              || |||||||||||||||||||||||
Sbjct: 85  ataaatctagatagatctat-------------ctatcatcaatatgaatgtgggaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| ||||| |||||||||||||||||||
Sbjct: 38  ctaaaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||| |||||||||||||| ||| || |||||| |||||||| ||||| |||||||||
Sbjct: 77  tagatttattaacatcaatataaatatgagaaatgctagaatgacttaca-ttgtgaaac 135

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 136 ggagggagta 145




>RF00906;MIR1122;AP004694.3/155364-155519 39947:Oryza sativa
           Japonica Group
          Length = 156

 Score =  101 bits (51), Expect = 3e-21
 Identities = 131/155 (84%), Gaps = 7/155 (4%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||| ||||||||| | |||| ||||||||| ||
Sbjct: 152 tactccctccgtttcacaatataagtcattttagcattttccacatttatattgatgcta 93

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||  |||||||    | || |||||||| ||||||| | |||||| ||||||
Sbjct: 92  atgaatctag--agatata----tctaaattcattagcatcaatgtaaatgtgagaaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || ||||| ||||| |||||||||||||||||||
Sbjct: 38  ctaaaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 127/156 (81%), Gaps = 7/156 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||| |||||||| || |||| | ||||||| ||
Sbjct: 5   tacttcctccgtttcacaatgtaagtcattttagcatttctcacatttacattgatgcta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||| ||||||      ||| | ||||||||||| ||||||||| ||||||| |||||
Sbjct: 65  atgaatttagata------tatctctagattcattagcatcaatataaatgtggaaaatg 118

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            || ||||| ||| | |||||||||||||| |||||
Sbjct: 119 ctaaaatgacttata-ttgtgaaacggagggagtat 153




>RF00906;MIR1122;AC210492.2/95445-95606 4538:Oryza glaberrima
           (African rice)
          Length = 162

 Score =  101 bits (51), Expect = 3e-21
 Identities = 130/155 (83%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   ||||||||||   ||||||||||| |||||||
Sbjct: 158 tactccctccgtttcacaatgtaagactttctagcattgcccgcattcatatagatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| |||  ||||| ||| ||||||||||| |||| || |||||||||| ||||
Sbjct: 98  atgaatctatatacttatatgtgtctagattcattagcatctatgtgaatgtgggcaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            ||||| |  ||||| || ||||||||||||||||
Sbjct: 38  ctagaaagtcttaca-ttatgaaacggaggaagta 5



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 93/112 (83%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||| || |||| |||| |||||||| | |||||  | | |||||||||||||||| |
Sbjct: 48  cattcacatagatgctaatgaatctagacacatataagtatatagattcattaacatcta 107

                                                               
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||| ||| |||| ||||| |  ||||| |||||||||||||| ||||
Sbjct: 108 tatgaatgcgggcaatgctagaaagtcttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AL928743.1/4136-4001 4530:Oryza sativa (rice)
          Length = 136

 Score =  101 bits (51), Expect = 3e-21
 Identities = 70/75 (93%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                       
Query: 93  atgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgt 152
           |||||||||||||||||||||||||||||||||||| ||| |||||||| ||| | ||||
Sbjct: 59  atgtttagattcattaacatcaatatgaatgtgggatatgctagaatgacttata-ttgt 117

                          
Query: 153 gaaacggaggaagta 167
           |||||||||||||||
Sbjct: 118 gaaacggaggaagta 132



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          ||||||||||| ||||||||| ||||| ||||||||||||| | ||||||||||||||||
Sbjct: 4  ctactccctccgtttcacaatgtaagtcattctagcattttccacattcatattgatgtt 63



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||||||||| |||||||||| |  | ||||||||||||||||
Sbjct: 133 ctacttcctccgtttcacaatataagtcattctagcatatcccacattcatattgatgtt 74

                     
Query: 72  aataaatcta 81
           ||| ||||||
Sbjct: 73  aatgaatcta 64



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                       
Query: 108 aacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 63  aacatcaatatgaatgtggaaaatgctagaatgacttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AP005764.5/63055-63194 39947:Oryza sativa Japonica
           Group
          Length = 140

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 66/70 (94%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           |||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||
Sbjct: 70  attcattaacatcaatatgaatatggaaaatgttagaatgacttaca-ttgtgaaacgga 12

                     
Query: 161 ggaagtatat 170
           ||||||||||
Sbjct: 11  ggaagtatat 2



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| |||||| |||||| |  ||||||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctaacattttccatattcatattgatgtta 64

                        
Query: 73 ataaatctagatag 86
          || ||| |||||||
Sbjct: 65 atgaatgtagatag 78



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           |||||||||| ||||| ||| ||||| ||| ||| |||||||  |||||||||||||
Sbjct: 136 tactccctccgtttcataatgtaagtcattttagtatttttcatattcatattgatg 80




>RF00906;MIR1122;AAAA02027662.1/3302-3160 39946:Oryza sativa Indica
           Group
          Length = 143

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 72/78 (92%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | |
Sbjct: 63  tatatgtctagattcattaacatcaatatgaatgtggaaaatgttagaatgacttata-t 121

                             
Query: 150 tgtgaaacggaggaagta 167
           | ||||||||||||||||
Sbjct: 122 tatgaaacggaggaagta 139



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||||||||| |||||| |||||| | ||||||||||||||||
Sbjct: 140 ctacttcctccgtttcataatataagtcattctaacattttccacattcatattgatgtt 81

                       
Query: 72  aataaatctaga 83
           ||| ||||||||
Sbjct: 80  aatgaatctaga 69




>RF00906;MIR1122;AACV01020396.1/23473-23343 39947:Oryza sativa
           Japonica Group
          Length = 131

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct: 127 tacttcctccgtttcacaatataagtcattctagcatttctcacattcatattgatgtta 68

                         
Query: 73  ataaatctagatag 86
           || |||||||||||
Sbjct: 67  atgaatctagatag 54



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||||||||| |||||| |||||||| ||| | |||||||||
Sbjct: 59  tagattcattaacatcaatatgaatgtgagaaatgctagaatgacttata-ttgtgaaac 117

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 118 ggaggaagta 127



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                    
Query: 127 gaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||| |||||||| ||||||| |||||||||||||||||
Sbjct: 44  gaaatgctagaatgacttacatt-gtgaaacggaggaagta 5



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||| ||||| ||||||||| ||||| ||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcattt 43




>RF00906;MIR1122;AAAA02031088.1/15871-15728 39946:Oryza sativa
           Indica Group
          Length = 144

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct: 140 tactccctccgtttcacaatataagtcattctagcattttccacattcatattgatgtta 81

                    
Query: 73  ataaatcta 81
           || ||||||
Sbjct: 80  atgaatcta 72



 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 70/77 (90%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           |||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||
Sbjct: 65  atatgtatagattcattaacatcaatatgaatgtggaaaatgctagaatgacttata-tt 123

                            
Query: 151 gtgaaacggaggaagta 167
           |||||||||||| ||||
Sbjct: 124 gtgaaacggagggagta 140




>RF00906;MIR1122;AP004562.3/125584-125444 39947:Oryza sativa
           Japonica Group
          Length = 141

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 65/69 (94%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                       
Query: 99  agattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacg 158
           |||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 72  agattcattaccatcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacg 14

                    
Query: 159 gaggaagta 167
           |||||||||
Sbjct: 13  gaggaagta 5



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 59/63 (93%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |
Sbjct: 76  attaacatcaatatgaatgtgggaaatgctagaatgacttac-tttgtgaaacggaggga 134

              
Query: 165 gta 167
           |||
Sbjct: 135 gta 137



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||| ||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatggta 64

                  
Query: 73 ataaatct 80
          || |||||
Sbjct: 65 atgaatct 72




>RF00906;MIR1122;AACV01008986.1/10814-10653 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 131/157 (83%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| ||||| ||||| ||| ||||| |||||||| ||   |  || ||||| |||||
Sbjct: 3   actacttcctccgtttcataatgtaagtcattctagccttacccatatgcatatagatgt 62

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||||||| | | |||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 63  taatgaatctagatatagacatatgtttagattcattaccatctatatgaatgtgggcaa 122

                                                
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagta 167
           || || ||||| ||||| || ||||||||||| ||||
Sbjct: 123 tgctaaaatgacttaca-ttatgaaacggagggagta 158



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 127/155 (81%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||| |||||||   | ||||||||| |||| ||
Sbjct: 158 tactccctccgtttcataatgtaagtcattttagcattgcccacattcatatagatggta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| | | || | ||| | |||||||||||||||| ||||| || |||| || |
Sbjct: 98  atgaatctaaacatatgtctatatctagattcattaacatctatatgcatatgggtaagg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttatgaaacggaggaagta 5




>RF00906;MIR1122;AP004761.3/70716-70562 39947:Oryza sativa Japonica
           Group
          Length = 155

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 129/155 (83%), Gaps = 8/155 (5%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||||||  ||||  | |||||||||||||||||
Sbjct: 5   tactccctccgtttcacaatataagtcattctattatttcccacattcatattgatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || || ||| ||  || ||       || ||||||||||||||||| |||||||||||| 
Sbjct: 65  atgaaactacatctattta-------agtttcattaacatcaatataaatgtgggaaata 117

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| |||||||||||||||||||
Sbjct: 118 ctagaatgacttaca-ttgtgaaacggaggaagta 151



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 ttcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggag 161
           ||||||||||||||||||||||||||||||  |||||||| ||| | |||||||||||||
Sbjct: 69  ttcattaacatcaatatgaatgtgggaaataatagaatgacttata-ttgtgaaacggag 11

                   
Query: 162 gaagtata 169
           | ||||||
Sbjct: 10  ggagtata 3




>RF00906;MIR1122;AP003368.2/55944-55807 39947:Oryza sativa
          Japonica Group
          Length = 138

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                      
Query: 11 actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||||||||||| ||||||||| ||||| ||||||||||||| | |||||||||||||||
Sbjct: 3  actactccctccgtttcacaatgtaagtcattctagcattttccacattcatattgatgt 62

                       
Query: 71 taataaatctaga 83
          |||| ||||||||
Sbjct: 63 taatgaatctaga 75



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatatgaatgtggaaaatgctagaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 44/48 (91%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                           
Query: 120 aatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 88  aatgtgggaaatgttagaatgacttcca-ttatgaaacggaggaagta 134




>RF00906;MIR1122;AC146948.2/15882-15739 39947:Oryza sativa Japonica
           Group
          Length = 144

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 71/77 (92%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| | ||
Sbjct: 65  atatgtatagattcattaacatcaatatgaatgtgggaaatgctagaatgacttata-tt 123

                            
Query: 151 gtgaaacggaggaagta 167
           |||||||||||| ||||
Sbjct: 124 gtgaaacggagggagta 140



 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||||||||||||  | |||||||||||||||||
Sbjct: 140 tactccctccgtttcacaatataagtcattctagcatttcccacattcatattgatgtta 81

                    
Query: 73  ataaatcta 81
           || ||||||
Sbjct: 80  atgaatcta 72



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 59/63 (93%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           |||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 66  attaacattaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggaggaa 8

              
Query: 165 gta 167
           |||
Sbjct: 7   gta 5




>RF00906;MIR1122;AP003491.3/121978-121836 39947:Oryza sativa
           Japonica Group
          Length = 143

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||||||| ||||||||| ||||| ||||||||||||| | || | |||||||||
Sbjct: 142 tactactccctccgtttcacaatgtaagtcattctagcattttccacaattatattgatg 83

                               
Query: 70  ttaataaatctagatagata 89
           |||||||||||| |||||||
Sbjct: 82  ttaataaatctatatagata 63



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||| |||||||||||||| | ||||| ||||| |||||||| ||||| |||||||||
Sbjct: 71  tagatttattaacatcaatataattgtggaaaatgctagaatgacttaca-ttgtgaaac 129

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 130 ggagggagta 139



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||||||||||||||||||| ||||| ||| ||||||||||| || | ||||||||
Sbjct: 5  tactccctccatttcacaatgtaagtcattttagcatttttcacaattatattgat 60




>RF00906;MIR1122;AP005719.3/148604-148741 39947:Oryza sativa
           Japonica Group
          Length = 138

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 64/68 (94%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgg 159
           ||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 68  gattcattaacatcaatatgaatgtgggaaatgctaaaatgacttaca-ttgtgaaacgg 126

                   
Query: 160 aggaagta 167
           ||||||||
Sbjct: 127 aggaagta 134



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||| ||||| ||| ||||||||  | ||||||||||||||||
Sbjct: 135 ctacttcctccgtttcacaatgtaagtcattttagcatttcccacattcatattgatgtt 76

                         
Query: 72  aataaatctagata 85
           ||| |||| |||||
Sbjct: 75  aatgaatcaagata 62



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                    
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||||| ||| ||||||||| ||||| ||| | ||||||| | |||||||||||||||
Sbjct: 5  tactccatccgtttcacaatgtaagtcattttggcattttccacattcatattgatgt 62



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                               
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           |||||||||||||||||| |||||  | ||||| ||||| ||||||||||||
Sbjct: 62  acatcaatatgaatgtggaaaatgccaaaatgacttaca-ttgtgaaacgga 12




>RF00906;MIR1122;AAAA02023191.1/5200-5048 39946:Oryza sativa Indica
           Group
          Length = 153

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 130/156 (83%), Gaps = 10/156 (6%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||  ||||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct: 150 ctactccctcggtttcacaatgtaagtcattctagcatttctcacattcatattgatgtt 91

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| || |||  |      | ||    |||||||||||||||||||||||||||| ||||
Sbjct: 90  aatgaaactatgtc-----acat----agattcattaacatcaatatgaatgtggaaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| || ||||||||||||||||
Sbjct: 39  gctagaatgacttaca-ttatgaaacggaggaagta 5



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 129/156 (82%), Gaps = 10/156 (6%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||| ||||||||||||| | ||||||||||||||||
Sbjct: 4   ctacttcctccgtttcataatgtaagtcattctagcattttccacattcatattgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| ||||||  | || |        ||| |||||||||||||||||||||||| |||||
Sbjct: 64  aatgaatctatgt-gaca--------tagtttcattaacatcaatatgaatgtgagaaat 114

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||||| ||||||||| |||| ||||
Sbjct: 115 gctagaatgacttaca-ttgtgaaaccgagggagta 149




>RF00906;MIR1122;AAAA02022591.1/58916-58767 39946:Oryza sativa
           Indica Group
          Length = 150

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 66/71 (92%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatatgaatgtgagaaatgctagaatgacttaca-ttgtgaaac 15

                      
Query: 158 ggaggaagtat 168
           ||| |||||||
Sbjct: 14  ggaagaagtat 4



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 121/147 (82%), Gaps = 13/147 (8%)
 Strand = Plus / Plus

                                                                       
Query: 24  tttcacaatataagttattctagcatttttcgcattcatattgatgttaataaatctaga 83
           ||||||||| ||||| |||||||||||| || ||||||||||||||||||| ||||||||
Sbjct: 16  tttcacaatgtaagtcattctagcatttctcacattcatattgatgttaatgaatctaga 75

                                                                       
Query: 84  tagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatt 143
                       | |||||||||||| |||||||| ||| ||| ||||| |||||||| |
Sbjct: 76  ------------tgtagattcattaatatcaatataaatatggaaaatgctagaatgact 123

                                      
Query: 144 tacatttgtgaaacggaggaagtatat 170
           |||| |||||||||||||| |||||||
Sbjct: 124 taca-ttgtgaaacggagggagtatat 149




>RF00906;MIR1122;FJ581044.1/8310-8181 4538:Oryza glaberrima
          (African rice)
          Length = 130

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||||||||||||||||| | || | ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagttattctagcattttccacaattatattgatgtta 64

                             
Query: 73 ataaatctagatagatata 91
          || |||||| |||||||||
Sbjct: 65 atgaatctatatagatata 83



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||| | ||||| ||||| |||||| | ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatataattgtggaaaatgctagaataacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5




>RF00906;MIR1122;AAAA02000682.1/3832-3993 39946:Oryza sativa Indica
           Group
          Length = 162

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 129/155 (83%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| |||||||||||     ||||||||| |||||||
Sbjct: 5   tactccctccgtttcataatgtaagtcattctagcattaccaacattcatatagatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | | || ||| | || ||||||||||||| ||||  ||||||| ||||
Sbjct: 65  atgaatctagacacacatctatatctaaattcattaacatctatatatatgtgggcaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||||||||
Sbjct: 125 ctagaatgacttaca-ttatgaaacggaggaagta 158



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 128/155 (82%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||| ||| ||||| |||||||||||   | |||  |||| |||||||
Sbjct: 158 tacttcctccgtttcataatgtaagtcattctagcattgcccacatatatatagatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||| |||||| | || | ||| |||||||||||||||| |||||||||| || ||||
Sbjct: 98  atgaatttagatatagatgtgtgtctagattcattaacatctatatgaatgttggtaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||| ||||| || ||||||||||| ||||
Sbjct: 38  ctagaatgacttaca-ttatgaaacggagggagta 5




>RF00906;MIR1122;AP003833.3/128680-128531 39947:Oryza sativa
           Japonica Group
          Length = 150

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 66/71 (92%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatatgaatgtgagaaatgctagaatgacttaca-ttgtgaaac 15

                      
Query: 158 ggaggaagtat 168
           ||| |||||||
Sbjct: 14  ggaagaagtat 4



 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 120/147 (81%), Gaps = 13/147 (8%)
 Strand = Plus / Plus

                                                                       
Query: 24  tttcacaatataagttattctagcatttttcgcattcatattgatgttaataaatctaga 83
           ||||||||| ||||| |||||||||||| || ||||||||||||||||||| ||||||||
Sbjct: 16  tttcacaatgtaagtcattctagcatttctcacattcatattgatgttaatgaatctaga 75

                                                                       
Query: 84  tagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatt 143
                       | |||||||||||| |||||||| ||| ||| ||||| || ||||| |
Sbjct: 76  ------------tgtagattcattaatatcaatataaatatggaaaatgctataatgact 123

                                      
Query: 144 tacatttgtgaaacggaggaagtatat 170
           |||| |||||||||||||| |||||||
Sbjct: 124 taca-ttgtgaaacggagggagtatat 149




>RF00906;MIR1122;DQ855268.1/1381-1542 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 129/155 (83%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   |||||||||| | |  || ||||| |||||||
Sbjct: 158 tactccctccgtttcacaatgtaagactttctagcattgtccatatacatatagatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| ||| ||| | |||| |||||||||||||| | | ||||||||||| ||||
Sbjct: 98  atgaatctaaatatatacacatgtctagattcattaacaactaaatgaatgtgggtaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            ||||| |  ||||| |||||||||||||||||||
Sbjct: 38  ctagaaagtcttaca-ttgtgaaacggaggaagta 5



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 125/155 (80%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||   ||||||||||   | ||||||| | | |||||
Sbjct: 5   tacttcctccgtttcacaatgtaagactttctagcattacccacattcatttagttgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| |  | ||||| |||||||||||||||||| ||||| || |||  ||||
Sbjct: 65  atgaatctagacatgtgtatatatttagattcattaacatctatatgtatatggacaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            ||||| |  ||||| |||||||||||||| ||||
Sbjct: 125 ctagaaagtcttaca-ttgtgaaacggagggagta 158




>RF00906;MIR1122;AP003256.3/164903-165020 39947:Oryza sativa
           Japonica Group
          Length = 118

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||
Sbjct: 49  attcattaacatcaatatgaatgtaggaaatgctagaatgacttaca-ttgtgaaacgga 107

                  
Query: 161 ggaagta 167
           |||||||
Sbjct: 108 ggaagta 114



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 54  atgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggagggagta 5



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||| ||||| ||||||||||||    ||||||||||||||||
Sbjct: 115 ctacttcctccgtttcacaatgtaagtcattctagcatttcctacattcatattgatgtt 56

              
Query: 72  aat 74
           |||
Sbjct: 55  aat 53



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattt 43




>RF00906;MIR1122;AACV01021945.1/10278-10160 39947:Oryza sativa
           Japonica Group
          Length = 119

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 66/71 (92%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||| |||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 47  tagattcattaatatcaatatgaatgtgggaaatgctagaatgacttaca-ttatgaaac 105

                      
Query: 158 ggaggaagtat 168
           |||||||||||
Sbjct: 106 ggaggaagtat 116



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||| ||| ||||| ||||||||||||  | ||||||||||||| |||
Sbjct: 115 tacttcctccgtttcataatgtaagtcattctagcatttcccacattcatattgatatta 56

                        
Query: 73  ataaatctagata 85
           || ||||||||||
Sbjct: 55  atgaatctagata 43



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 12 ctactccctccatttcacaatataagttattctagcat 49
          ||||||||||| ||||||||| ||||| ||||||||||
Sbjct: 4  ctactccctccgtttcacaatgtaagtcattctagcat 41




>RF00906;MIR1122;AAAA02026649.1/23180-23037 39946:Oryza sativa
           Indica Group
          Length = 144

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 66/71 (92%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||||
Sbjct: 72  tagattcattaacatcaatatgaatatgggaaatgctagaatgacttaca-ttatgaaac 130

                      
Query: 158 ggaggaagtat 168
           |||||||||||
Sbjct: 131 ggaggaagtat 141



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatatgaatatgggaaatgctagaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||| ||| ||||| ||||||||||||  |  ||||||||||||||||
Sbjct: 140 tacttcctccgtttcataatgtaagtcattctagcatttcccatattcatattgatgtta 81

                       
Query: 73  ataaatctagat 84
           || |||||||||
Sbjct: 80  atgaatctagat 69




>RF00906;MIR1122;AP002539.2/12548-12403 39947:Oryza sativa Japonica
           Group
          Length = 146

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 127/156 (81%), Gaps = 17/156 (10%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||||||||| || ||||||||||||| |||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagcatttctcacattcatattgatatta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||                || |||| |||||||||||||| |||||||||
Sbjct: 65  atgaatctagat----------------atccattgacatcaatatgaatatgggaaatg 108

                                               
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtat 168
            |||||||| ||||| ||||||||||||||||||||
Sbjct: 109 ctagaatgacttaca-ttgtgaaacggaggaagtat 143



 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||| ||||||||||||||| |||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaatatcaatatgaatgtgagaaatgctagaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||| ||||| ||||||||| ||||| ||||||||||||  |  ||||||||||||||
Sbjct: 142 tacttcctccgtttcacaatgtaagtcattctagcatttcccatattcatattgatgt 85




>RF00906;MIR1122;AP008215.1/3976175-3976317 39947:Oryza sativa
           Japonica Group
          Length = 143

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct: 71  tagattcattaacatcaatatgaatatgggaaatgctagaatgacttaca-ttgtgaaac 129

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 130 ggagggagta 139



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  |  ||||||||||||||||
Sbjct: 139 tactccctccgtttcacaatgtaagtcattctagcatttcccatattcatattgatgtta 80

                      
Query: 73  ataaatctaga 83
           || ||||||||
Sbjct: 79  atgaatctaga 69




>RF00906;MIR1122;AP008216.1/8796170-8796022 39947:Oryza sativa
           Japonica Group
          Length = 149

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 126/154 (81%), Gaps = 14/154 (9%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||| |  ||||||||||||||||
Sbjct: 145 tactccctccgtttcacaatgtaagtcattctagcattttccatattcatattgatgtta 86

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || ||||||||              |||||| |||||||||||||| |||||| ||||||
Sbjct: 85  atgaatctaga-------------ctagatttattaacatcaatataaatgtgagaaatg 39

                                             
Query: 133 ttagaatgatttacatttgtgaaacggaggaagt 166
            |||||||| ||||| || |||||||||||||||
Sbjct: 38  ctagaatgacttaca-ttatgaaacggaggaagt 6



 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 123/150 (82%), Gaps = 14/150 (9%)
 Strand = Plus / Plus

                                                                       
Query: 18  cctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaataaa 77
           ||||| ||||| ||| ||||| |||||||||||| || |||| |||||||||||||||||
Sbjct: 10  cctccgtttcataatgtaagtcattctagcatttctcacatttatattgatgttaataaa 69

                                                                       
Query: 78  tctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttaga 137
           |||||             | ||||||||||||||||||||||||| ||| ||||| ||||
Sbjct: 70  tctag-------------tctagattcattaacatcaatatgaatatggaaaatgctaga 116

                                         
Query: 138 atgatttacatttgtgaaacggaggaagta 167
           |||| ||||| |||||||||||||| ||||
Sbjct: 117 atgacttaca-ttgtgaaacggagggagta 145




>RF00906;MIR1122;AP006756.2/89933-90079 39947:Oryza sativa Japonica
           Group
          Length = 147

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||||
Sbjct: 73  tagattcattagcatcaatatgaatgtgggaaatgctaaaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 14  ggaggaagta 5



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||| ||||||||  | |||||||||||||| ||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattttagcatttcccacattcatattgatgcta 64

                    
Query: 73 ataaatctag 82
          || |||||||
Sbjct: 65 atgaatctag 74



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 58/65 (89%), Gaps = 2/65 (3%)
 Strand = Plus / Plus

                                                                       
Query: 104 cattaacatcaatatgaatgtgggaaatgttaga-atgatttacatttgtgaaacggagg 162
           ||||| ||||||||||||||||||||||| || | |||| ||||| ||||||||||||||
Sbjct: 80  cattagcatcaatatgaatgtgggaaatgctaaacatgacttaca-ttgtgaaacggagg 138

                
Query: 163 aagta 167
            ||||
Sbjct: 139 gagta 143



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttat-tctagcatttttcgcattcatattgatg 69
           |||||||||||| ||||||||| ||||| || | ||||||||  | ||||||||||||||
Sbjct: 145 actactccctccgtttcacaatgtaagtcatgtttagcatttcccacattcatattgatg 86

                
Query: 70  ttaat 74
            ||||
Sbjct: 85  ctaat 81




>RF00906;MIR1122;AAAA02021768.1/34563-34436 39946:Oryza sativa
           Indica Group
          Length = 128

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatctatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          ||||||||||| ||||||||| ||||| ||||||||||||  | ||||||||| ||||||
Sbjct: 4  ctactccctccgtttcacaatgtaagtcattctagcatttcccacattcatatagatgtt 63

                    
Query: 72 aataaatcta 81
          ||| ||||||
Sbjct: 64 aatgaatcta 73



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 49/53 (92%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 73  atatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggagggagta 124



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatat 64
           ||||||||||| ||||||||| ||||| ||||||||||||  | |||||||||
Sbjct: 125 ctactccctccgtttcacaatgtaagtcattctagcatttcccacattcatat 73




>RF00906;MIR1122;AACV01014253.1/3077-3238 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 98/114 (85%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| |||| ||||||||||| ||| |||   |||| ||||||||||| |||| |
Sbjct: 48  cattcatatagatgctaataaatctatatatataataatgtctagattcattagcatcta 107

                                                                 
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtata 169
           |||||||||||| |||||||||| |  ||||| |||||||||||||| ||||||
Sbjct: 108 tatgaatgtgggcaatgttagaaagtcttaca-ttgtgaaacggagggagtata 160



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 124/155 (80%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   ||||| ||||   | ||||||||| |||| ||
Sbjct: 158 tactccctccgtttcacaatgtaagactttctaacattgcccacattcatatagatgcta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| |    ||||| | |||||| |||| |||| ||||||||||||| ||||
Sbjct: 98  atgaatctagacattattatatatatagatttattagcatctatatgaatgtgggtaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || || |  ||||| || ||||||||||||||||
Sbjct: 38  ctataaagtcttaca-ttatgaaacggaggaagta 5




>RF00906;MIR1122;AP005731.3/38189-38042 39947:Oryza sativa Japonica
           Group
          Length = 148

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||| || ||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 76  tagatttatgaacatcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaac 134

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 135 ggaggaagta 144



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 126/156 (80%), Gaps = 15/156 (9%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||| ||||| ||||||||||||  | ||||||||||||||||
Sbjct: 145 ctacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtt 86

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
            |||||||||||               | |||||| ||||||||||||||||||||||||
Sbjct: 85  cataaatctaga--------------caaattcatgaacatcaatatgaatgtgggaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||  ||||| |||||||||||||| ||||
Sbjct: 39  gctagaatggcttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AACV01008500.1/10563-10402 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 131/158 (82%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||||||||  ||||| ||| ||||| ||| ||||||||||| ||||||  | |||||
Sbjct: 160 actactccctctgtttcataatgtaagtcattgtagcatttttcacattcacttggatgt 101

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           || | |||||||| | ||||| ||  ||||||||| ||||||| |||| ||| || ||||
Sbjct: 100 tagtgaatctagacatatatacatacttagattcactaacatctatatcaatatgagaaa 41

                                                 
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagtat 168
           || |||||||| ||||| || ||||||||||| |||||
Sbjct: 40  tgctagaatgacttaca-ttatgaaacggagggagtat 4



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 112/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| |||||||||||| ||  ||| |||| |||||||
Sbjct: 5   tactccctccgtttcataatgtaagtcattctagcatttctcatattgatatagatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
            | ||||||  ||  ||||||||| |||||||| ||||||| |  ||||||||  |||||
Sbjct: 65  gtgaatctaagtatgtatatatgtctagattcactaacatccaagtgaatgtgaaaaatg 124

                            
Query: 133 ttagaatgatttacatt 149
            || ||||| |||||||
Sbjct: 125 ctacaatgacttacatt 141




>RF00906;MIR1122;AC108755.2/71660-71514 39947:Oryza sativa Japonica
           Group
          Length = 147

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||||
Sbjct: 75  tagattcattagcatcaatatgaatgtgggaaatgctaaaatgacttaca-ttgtgaaac 133

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 134 ggaggaagta 143



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||| ||||||||  | |||||||||||||| ||
Sbjct: 143 tacttcctccgtttcacaatgtaagtcattttagcatttcccacattcatattgatgcta 84

                     
Query: 73  ataaatctag 82
           || |||||||
Sbjct: 83  atgaatctag 74



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 58/65 (89%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                       
Query: 104 cattaacatcaatatgaatgtgggaaatgttaga-atgatttacatttgtgaaacggagg 162
           ||||| ||||||||||||||||||||||| || | |||| ||||| ||||||||||||||
Sbjct: 68  cattagcatcaatatgaatgtgggaaatgctaaacatgacttaca-ttgtgaaacggagg 10

                
Query: 163 aagta 167
            ||||
Sbjct: 9   gagta 5



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 actactccctccatttcacaatataagttat-tctagcatttttcgcattcatattgatg 69
          |||||||||||| ||||||||| ||||| || | ||||||||  | ||||||||||||||
Sbjct: 3  actactccctccgtttcacaatgtaagtcatgtttagcatttcccacattcatattgatg 62

               
Query: 70 ttaat 74
           ||||
Sbjct: 63 ctaat 67




>RF00906;MIR1122;AP005590.3/107829-107687 39947:Oryza sativa
           Japonica Group
          Length = 143

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatatgaatatgggaaatgctagaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| ||||||||||||  |  ||||||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcatttcccatattcatattgatgtta 64

                     
Query: 73 ataaatctaga 83
          || ||||||||
Sbjct: 65 atgaatctaga 75




>RF00906;MIR1122;AACV01001798.1/30232-30103 39947:Oryza sativa
           Japonica Group
          Length = 130

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 62  tagattcattaacatcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaac 120

                     
Query: 158 ggaggaagta 167
            |||| ||||
Sbjct: 121 agagggagta 130



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||  ||||||||| ||||| ||||||||||||  | |||||||||||||||||
Sbjct: 130 tactccctctgtttcacaatgtaagtcattctagcatttcccacattcatattgatgtta 71

                    
Query: 73  ataaatcta 81
           || ||||||
Sbjct: 70  atgaatcta 62



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                              
Query: 24 tttcacaatataagttattctagcatttttcgcattcatattgatgttaata 75
          ||||||||||||||| ||| ||||||||| | ||||||||||||||||||||
Sbjct: 12 tttcacaatataagtcattatagcattttccacattcatattgatgttaata 63



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 56/63 (88%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           |||||||||||||||||||||| ||||| || ||||| ||| | ||||||||| ||||||
Sbjct: 62  attaacatcaatatgaatgtggaaaatgctataatgacttata-ttgtgaaacagaggaa 4

              
Query: 165 gta 167
           |||
Sbjct: 3   gta 1




>RF00906;MIR1122;AAAA02012042.1/23113-23216 39946:Oryza sativa
           Indica Group
          Length = 104

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 62/66 (93%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 ttcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggag 161
           ||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||
Sbjct: 69  ttcattaacatcaatatgaatgtgggaaatgctagaatgacttgca-ttgtgaaacggag 11

                 
Query: 162 gaagta 167
           ||||||
Sbjct: 10  gaagta 5



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                      
Query: 11 actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||||| ||||| |||||||||  |||| ||||||||||||  | |||||||||||||||
Sbjct: 3  actacttcctccgtttcacaatgcaagtcattctagcatttcccacattcatattgatgt 62

              
Query: 71 taat 74
          ||||
Sbjct: 63 taat 66




>RF00906;MIR1122;AP004258.3/156327-156194 39947:Oryza sativa
           Japonica Group
          Length = 134

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 62/66 (93%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 103 tcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagg 162
           ||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 67  tcattaacatcgatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggagg 125

                 
Query: 163 aagtat 168
           ||||||
Sbjct: 126 aagtat 131



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 57/62 (91%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 ttaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaag 165
           |||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct: 65  ttaacatcgatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggagggag 7

             
Query: 166 ta 167
           ||
Sbjct: 6   ta 5



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| ||||||||||||  | ||||||||| |||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcatttcccacattcatatcgatgtta 64

           
Query: 73 a 73
          |
Sbjct: 65 a 65



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||  | ||||||||| |||||||
Sbjct: 130 tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatatcgatgtta 71

             
Query: 73  at 74
           ||
Sbjct: 70  at 69




>RF00906;MIR1122;AAAA02005623.1/56801-56936 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 76/85 (89%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                       
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttac 146
           |||||||||| |||||||||||||||| ||||||||||| | |||| |||||||| ||||
Sbjct: 53  atatatatgtctagattcattaacatctatatgaatgtgtgcaatgctagaatgacttac 112

                                    
Query: 147 atttgtgaaacggaggaagtatatg 171
           | || ||||| ||||||||||||||
Sbjct: 113 a-ttatgaaatggaggaagtatatg 136



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||||||||| ||| ||||| |||||||||||   | ||||||||| |||||||
Sbjct: 132 tacttcctccatttcataatgtaagtcattctagcattgcacacattcatatagatgtta 73

                               
Query: 73  ataaatctagatagatatat 92
           || |||||||| | ||||||
Sbjct: 72  atgaatctagacatatatat 53



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 13 tactccctccatttcacaatataagttattctagcatt 50
          |||||||||| ||||| ||| ||||| |||||||||||
Sbjct: 5  tactccctccgtttcataatgtaagtcattctagcatt 42




>RF00906;MIR1122;AP005460.3/28792-28659 39947:Oryza sativa Japonica
           Group
          Length = 134

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 73/81 (90%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                       
Query: 89  atatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacat 148
           |||||||| |||||||||||  |  ||||||||||||||||||| |||||||| ||||| 
Sbjct: 53  atatatgtctagattcattagtactaatatgaatgtgggaaatgctagaatgacttaca- 111

                                
Query: 149 ttgtgaaacggaggaagtata 169
           |||||||||||||||||||||
Sbjct: 112 ttgtgaaacggaggaagtata 132



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                              
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatat 64
          |||| ||||| ||||||||| |||||||||||||||||| || |||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagttattctagcatttctcacattcatat 56



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||| |||||| |||||| | ||||||| |||||||||||||||||
Sbjct: 56  atatgaatgtgagaaatgctagaataacttacatt-gtgaaacggaggaagta 5



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatatt 65
           |||| ||||| ||||||||| ||||| ||||||||||||  | ||||||||||
Sbjct: 130 tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatatt 78




>RF00906;MIR1122;AAAA02032822.1/7151-7018 39946:Oryza sativa Indica
           Group
          Length = 134

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||| ||||||||||| | | |||||||||||||
Sbjct: 130 tacttcctccgtttcacaatgtaagtcattttagcatttttcacgtacatattgatgtta 71

                                   
Query: 73  ataaatctagatagatatatatgt 96
           || |||||||||||||||| ||||
Sbjct: 70  atgaatctagatagatataaatgt 47



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||| | |||  ||||| || ||||| ||||| |||||||||
Sbjct: 62  tagattcattaacatcaatatgtacgtgaaaaatgctaaaatgacttaca-ttgtgaaac 120

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 121 ggaggaagta 130




>RF00906;MIR1122;AAAA02014011.1/23143-23002 39946:Oryza sativa
           Indica Group
          Length = 142

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgg 159
           ||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 71  gattcattagcatcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacgg 13

                   
Query: 160 aggaagta 167
           ||| ||||
Sbjct: 12  agggagta 5



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgg 159
           ||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct: 72  gattcattagcatcaatatgaatgtgggaaatgctagaatgacttaca-ttatgaaacgg 130

                   
Query: 160 aggaagta 167
           ||| ||||
Sbjct: 131 agggagta 138



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                      
Query: 10 tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
          ||||||||||||| ||||||||| ||||| ||||||||||||  | ||||||||||||||
Sbjct: 2  tactactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatg 61

                    
Query: 70 ttaataaatc 79
           |||| ||||
Sbjct: 62 ctaatgaatc 71



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||| ||||||||||||  | |||||||||||||| ||
Sbjct: 138 tactccctccgtttcataatgtaagtcattctagcatttcccacattcatattgatgcta 79

                  
Query: 73  ataaatc 79
           || ||||
Sbjct: 78  atgaatc 72




>RF00906;MIR1122;AACV01021901.1/3791-3658 39947:Oryza sativa
           Japonica Group
          Length = 134

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 89  atatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacat 148
           |||| ||| |||||||||||||||||||||||||||| |||||  |||||||| ||||| 
Sbjct: 82  atatttgtctagattcattaacatcaatatgaatgtgagaaatactagaatgacttaca- 24

                               
Query: 149 ttgtgaaacggaggaagtat 168
           || |||||||||||||||||
Sbjct: 23  ttatgaaacggaggaagtat 4



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||| ||| ||||| ||||||| |||| || |||||||||||||||||
Sbjct: 5  tacttcctccgtttcataatgtaagtcattctagtatttctcacattcatattgatgtta 64

                     
Query: 73 ataaatctaga 83
          || ||||||||
Sbjct: 65 atgaatctaga 75



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatatt 65
           ||||||||||||||||| ||| ||||| |||||||||||| || ||||||||||
Sbjct: 131 ctactccctccatttcataatgtaagtcattctagcatttctcacattcatatt 78



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatt 149
           |||||||||||| |||||| |||||||| |||||||
Sbjct: 78  aatatgaatgtgagaaatgctagaatgacttacatt 113




>RF00906;MIR1122;AAAA02014478.1/30664-30503 39946:Oryza sativa
           Indica Group
          Length = 162

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 93/108 (86%), Gaps = 1/108 (0%)
 Strand = Plus / Minus

                                                                       
Query: 60  catattgatgttaataaatctagatagatatatatgtttagattcattaacatcaatatg 119
           ||||| ||||||||| |||||| ||| ||| |||||| |||||||||||||||| | |||
Sbjct: 111 catatggatgttaatgaatctaaatacatacatatgtctagattcattaacatctaaatg 52

                                                           
Query: 120 aatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| |||| |||| ||||| |  ||||| |||||||||||||||||||
Sbjct: 51  aatatgggcaatgctagaaagtcttaca-ttgtgaaacggaggaagta 5



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 93/112 (83%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||| | ||||||||| |||||||| | || ||| | |||||||||||||||||| ||
Sbjct: 49  attcatttagatgttaatgaatctagacatatgtatgtatttagattcattaacatccat 108

                                                               
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||| | ||||| |||  ||||| |  ||||| |||||||||||||| |||||
Sbjct: 109 atgtacgtgggcaatactagaaagtcttaca-ttgtgaaacggagggagtat 159




>RF00906;MIR1122;AP004774.3/34374-34243 39947:Oryza sativa
          Japonica Group
          Length = 132

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||||||||| ||||||| |||| ||  ||| ||||||||| ||
Sbjct: 5  tacttcctccgtttcacaatataagtcattctagtatttctcatatttatattgatgata 64

                                  
Query: 73 ataaatctagatagatatatatgt 96
          || |||||||||||||||||||||
Sbjct: 65 atgaatctagatagatatatatgt 88



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 61/70 (87%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||||||| ||| || |||||  |||||||| ||| | |||||||||
Sbjct: 73  tagattcattatcatcaatataaatatgagaaatactagaatgacttata-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 14  ggaggaagta 5




>RF00906;MIR1122;AACV01017229.1/6664-6798 39947:Oryza sativa
          Japonica Group
          Length = 135

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagttattctagcattttccacattcatattgatgtta 64



 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                       
Query: 93  atgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgt 152
           |||||||||||||| ||||||||||||||||||| ||||| |||||| | ||||| ||||
Sbjct: 77  atgtttagattcat-aacatcaatatgaatgtggaaaatgctagaataacttaca-ttgt 20

                             
Query: 153 gaaacggaggaagtatat 170
           |||||||||| |||||||
Sbjct: 19  gaaacggagggagtatat 2



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                       
Query: 108 aacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 73  aacatcaatatgaatatggaaaatgctagaatgacttaca-ttgtgaaacggaggaagta 131



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| ||||| ||||||||| ||||| ||||||||||||| |  ||||||||||||||
Sbjct: 133 actacttcctccgtttcacaatgtaagtcattctagcattttccatattcatattgatgt 74

            
Query: 71  t 71
           |
Sbjct: 73  t 73




>RF00906;MIR1122;AAAA02022147.1/7740-7901 39946:Oryza sativa Indica
           Group
          Length = 162

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 128/155 (82%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   ||||||||||   |  |||||| | |||| ||
Sbjct: 158 tactccctccgtttcacaatgtaagactttctagcattgcccaaattcatttagatgcta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||| | || ||| |||||||||||||||||||  ||||| ||||||| ||||
Sbjct: 98  atgaatctagacatatgtatgtgtttagattcattaacatttatatgtatgtgggcaatg 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            ||||| |  ||||| |||||||||||||||||||
Sbjct: 38  ctagaaagtcttaca-ttgtgaaacggaggaagta 5



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 128/158 (81%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| ||||| ||||||||| ||||   ||||||||||   | ||| |||||  ||||
Sbjct: 3   actacttcctccgtttcacaatgtaagactttctagcattgcccacatacatataaatgt 62

                                                                       
Query: 71  taataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           |||| |||||| | | ||| |||||| ||||||||||| |||| | |||||| |||| ||
Sbjct: 63  taatgaatctaaacacatacatatgtctagattcattagcatctaaatgaatttgggcaa 122

                                                 
Query: 131 tgttagaatgatttacatttgtgaaacggaggaagtat 168
           || ||||| |  ||||| |||||||||||||| |||||
Sbjct: 123 tgctagaaagtcttaca-ttgtgaaacggagggagtat 159




>RF00906;MIR1122;AC098572.2/23110-23250 39947:Oryza sativa Japonica
           Group
          Length = 141

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||||||||||||||| | | ||||||||| |||||||
Sbjct: 137 tactccctccgtttcataatgtaagttattctagcattgtccacattcatatagatgtta 78

                      
Query: 73  ataaatctaga 83
           |||||||||||
Sbjct: 77  ataaatctaga 67



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 67/78 (85%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 92  tatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttg 151
           ||||| |||||| ||||||||| ||||||||||||  |||| |||||| | ||||| || 
Sbjct: 63  tatgtctagatttattaacatctatatgaatgtggacaatgctagaataacttaca-tta 121

                             
Query: 152 tgaaacggaggaagtata 169
           ||||||||||| ||||||
Sbjct: 122 tgaaacggagggagtata 139



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 10 tactactccctccatttcacaatataagttattctagcatt 50
          ||||||| ||||| ||||| ||| |||||||||||||||||
Sbjct: 2  tactacttcctccgtttcataatgtaagttattctagcatt 42



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 118 tgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||| |||| |||||| | |||||||  ||||||||||||||||
Sbjct: 53  tgaatgtgggcaatgctagaataacttacatta-tgaaacggaggaagta 5




>RF00906;MIR1122;AACV01014011.1/24546-24675 39947:Oryza sativa
           Japonica Group
          Length = 130

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 62/67 (92%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           ||||||||| |||||||||||||| ||||||| |||||||| ||||| ||||||||||||
Sbjct: 61  attcattaatatcaatatgaatgttggaaatgctagaatgacttaca-ttgtgaaacgga 119

                  
Query: 161 ggaagta 167
           |||||||
Sbjct: 120 ggaagta 126



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||| |||||||||| |||||||| ||||||| |||||||||||| ||||
Sbjct: 56  atatgaacgtgggaaatgctagaatgacttacatt-gtgaaacggagggagta 5



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| ||||| ||||||||| ||||| ||||||||||||    ||||||||||||| |
Sbjct: 128 actacttcctccgtttcacaatgtaagtcattctagcatttccaacattcatattgatat 69

               
Query: 71  taat 74
           ||||
Sbjct: 68  taat 65



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattt 43




>RF00906;MIR1122;AAAA02024103.1/2739-2606 39946:Oryza sativa Indica
           Group
          Length = 134

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 71/79 (89%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 89  atatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacat 148
           |||||| | ||||||||||||||||||||||||||||| |||||||||| ||| ||||| 
Sbjct: 53  atatatatctagattcattaacatcaatatgaatgtggaaaatgttagagtgacttaca- 111

                              
Query: 149 ttgtgaaacggaggaagta 167
           | |||||||||||| ||||
Sbjct: 112 tggtgaaacggagggagta 130



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| |||||| || ||||| | |||| |||||| | ||||||||||||||||
Sbjct: 131 ctactccctccgtttcaccatgtaagtcactctaacattttccacattcatattgatgtt 72

                              
Query: 72  aataaatctagatagatat 90
           ||| |||||||||| ||||
Sbjct: 71  aatgaatctagatatatat 53




>RF00906;MIR1122;AP005620.3/106841-106973 39947:Oryza sativa
           Japonica Group
          Length = 133

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 62/67 (92%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           |||||||||||||||||||||| ||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 70  attcattaacatcaatatgaatatggaaaatgctagaatgacttaca-ttgtgaaacgga 12

                  
Query: 161 ggaagta 167
           |||||||
Sbjct: 11  ggaagta 5



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                      
Query: 10 tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
          ||||||| ||||| ||||||||| ||||| ||||||||||||| |  |||||||||||||
Sbjct: 2  tactacttcctccgtttcacaatgtaagtcattctagcattttccatattcatattgatg 61

               
Query: 70 ttaat 74
          |||||
Sbjct: 62 ttaat 66



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| |||| ||||| ||| ||||| ||||||||||||| |  ||||||||||||||
Sbjct: 130 ctactctctccgtttcataatgtaagtcattctagcattttccatattcatattgatgt 72



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           |||||||||||||| ||| ||||| |||||||| |||||||
Sbjct: 72  acatcaatatgaatatggaaaatgctagaatgacttacatt 112




>RF00906;MIR1122;AC093953.2/28747-28908 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||| | |||| | |||||||||||||||||||| |
Sbjct: 48  cattcatatagatgttaatgaatctagacatatatgtgtgtttagattcattaacatcta 107

                      
Query: 116 tatgaatgtgg 126
           |||||||||||
Sbjct: 108 tatgaatgtgg 118



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 96/113 (84%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||| | | | |||||||| |||||||||||||||| |
Sbjct: 115 cattcatatagatgttaatgaatctaaacacacatatatgtctagattcattaacatcta 56

                                                                
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||||||| |  |||| ||||| |  ||||| || |||||||||||||||||
Sbjct: 55  tatgaatgtagacaatgctagaaagtcttaca-ttatgaaacggaggaagtat 4




>RF00906;MIR1122;AAAA02008915.1/14402-14269 39946:Oryza sativa
           Indica Group
          Length = 134

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 62/67 (92%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           ||||||||||| ||||||||||||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 70  attcattaacagcaatatgaatgtgagaaatgctagaatgacttaca-ttgtgaaacgga 12

                  
Query: 161 ggaagta 167
           |||||||
Sbjct: 11  ggaagta 5



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttctcacattcatattgctgtta 64

            
Query: 73 at 74
          ||
Sbjct: 65 at 66



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttt 52
           |||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 130 tactccctccgtttcacaatgtaagtcattctagcatttt 91



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 48/54 (88%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||| ||| ||||| |||||||| ||||||| |||||||||||| |||||
Sbjct: 79  atatgaatatggaaaatgctagaatgacttacatt-gtgaaacggagggagtat 131




>RF00906;MIR1122;AAAA02015106.1/4906-5019 39946:Oryza sativa Indica
           Group
          Length = 114

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||||||  |||||||| |||||||||| |||||| ||  |||||||||||||||| |
Sbjct: 24  cattcatatatatgttaatgaatctagatatatatatgtgcctagattcattaacatcta 83

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           |||||||||||| |||| |||||
Sbjct: 84  tatgaatgtgggcaatgctagaa 106



 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||  | |||||||| | |||||||||||||||  |
Sbjct: 91  cattcatatagatgttaatgaatctaggcacatatatatatctagattcattaacatata 32

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           |||||||||||| |||| |||||
Sbjct: 31  tatgaatgtgggcaatgctagaa 9




>RF00906;MIR1122;AACV01011062.1/4765-4926 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   ||||||||||   | ||| ||| | |||||||
Sbjct: 158 tactccctccgtttcacaatgtaagactttctagcattgcccacatacatttagatgtta 99

                                                              
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatg 123
           ||||||||||| | ||| ||||||||||||||||||||||| | |||||||
Sbjct: 98  ataaatctagacatatacatatgtttagattcattaacatctaaatgaatg 48



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 93/112 (83%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||| | ||||||||| |||||| | | || ||||||| |||||| ||||||||| |
Sbjct: 48  cattcatttagatgttaatgaatctaaacatatgtatatgtctagatttattaacatcta 107

                                                               
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
            ||| ||||||| |||| ||||| |  ||||||| |||||||||||| ||||
Sbjct: 108 aatgtatgtgggcaatgctagaaagtcttacatt-gtgaaacggagggagta 158




>RF00906;MIR1122;AP004566.3/127143-127010 39947:Oryza sativa
           Japonica Group
          Length = 134

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||| ||| ||||  |||||| |||||||| ||||||||||||||||
Sbjct: 131 ctacttcctccgtttcataatgtaagccattctatcatttttcacattcatattgatgtt 72

                              
Query: 72  aataaatctagatagatat 90
           ||| |||||||||||||||
Sbjct: 71  aatgaatctagatagatat 53



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||||  ||||| |||||||  ||||| || ||||||
Sbjct: 62  tagattcattaacatcaatatgaatgtgaaaaatgatagaatggcttaca-ttatgaaac 120

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 121 ggaggaagta 130



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                              
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatat 64
          |||||||||| ||||||||||||||| ||||||||||||  | |||||||||
Sbjct: 5  tactccctccgtttcacaatataagtcattctagcatttcccacattcatat 56



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||||| |||||||| ||| | |||||||||||||| ||||
Sbjct: 56  atatgaatgtgggaaatgctagaatgacttata-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AAAA02022015.1/31010-31136 39946:Oryza sativa
           Indica Group
          Length = 127

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||| ||||||| |||||||| ||||| || ||||||
Sbjct: 55  tagattcattaacatcaatatgaatgtaggaaatgctagaatgacttaca-ttatgaaac 113

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 114 ggagggagta 123



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||||||||| ||||| ||| ||||| ||||||||||||    ||||||||||||||
Sbjct: 126 tactactccctccgtttcataatgtaagtcattctagcatttcctacattcatattgatg 67

                           
Query: 70  ttaataaatctagata 85
           ||||| ||||||||||
Sbjct: 66  ttaatgaatctagata 51



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                    
Query: 128 aaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 43  aaatgctagaatgacttacatt-gtgaaacggaggaagtat 4



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttt 52
          |||| ||||| ||||||||| ||||| |||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttt 44




>RF00906;MIR1122;AP005694.3/90268-90429 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||||| ||||||||| || ||||||| ||| |||||| |||||||||||||||| ||
Sbjct: 49  attcatatagatgttaatgaacctagatatatacatatgtctagattcattaacatctat 108

                     
Query: 117 atgaatgtgg 126
           ||||||||||
Sbjct: 109 atgaatgtgg 118



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   || ||| ||| | | ||||||||| |||||||
Sbjct: 158 tactccctccgtttcacaatgtaagactttttaggattgtccacattcatatagatgtta 99

                                                                  
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtggg 127
           || |||||||| | || ||||| | ||| |||||||||||| |||||||| ||||
Sbjct: 98  atgaatctagacatatgtatatatctaggttcattaacatctatatgaatatggg 44




>RF00906;MIR1122;ABRL01000382.1/8325-8450 65489:Oryza barthii
          Length = 126

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 70/78 (89%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| |||||||||||||||| ||||||||||||| |||| ||||| || ||||| |
Sbjct: 81  tatatgtctagattcattaacatctatatgaatgtgggcaatgctagaaagacttaca-t 23

                             
Query: 150 tgtgaaacggaggaagta 167
           | ||||||||||||||||
Sbjct: 22  tatgaaacggaggaagta 5




>RF00906;MIR1122;AY947024.1/140-5 4530:Oryza sativa (rice)
          Length = 136

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 55/58 (94%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 60  atcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggaggaagtat 4



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||||||||| ||||||||||||  | |||||||||| ||| ||
Sbjct: 132 tactccctccgtttcacaatataagtcattctagcatttcccacattcatattaatgcta 73

                        
Query: 73  ataaatctagata 85
           || ||||||||||
Sbjct: 72  atgaatctagata 60



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||| ||||||||||||||||||| |||||||| ||| | |||||||||
Sbjct: 64  tagattcattagcattaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaac 122

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 123 ggagggagta 132



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgat 60




>RF00906;MIR1122;AL731615.4/29247-29098 39947:Oryza sativa Japonica
           Group
          Length = 150

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||||
Sbjct: 73  tagattcattaacatcaatatgaatgtgggaaatggtaaaatgacttaca-ttatgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 125/156 (80%), Gaps = 13/156 (8%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||| ||| ||||| ||| || |||||  | ||||||||||||||||
Sbjct: 4   ctactccctccgtttcataatgtaagtcattttaccatttcccacattcatattgatgtt 63

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||||             ||||||||||||||||||||||||| | | ||||
Sbjct: 64  aatgaatctagatc------------tagattcattaacatcaatatgaatatagtaaat 111

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||| | ||||| |||||||||||||
Sbjct: 112 gctagaatgacttata-ttgtggaacggaggaagta 146




>RF00906;MIR1122;FJ266024.1/267591-267730 39946:Oryza sativa
          Indica Group
          Length = 140

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| ||||||||||||| | |||| |||||||| |||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattttccacatttatattgatatta 64

                            
Query: 73 ataaatctagatagatat 90
          |||||| |||||| ||||
Sbjct: 65 ataaatttagataaatat 82



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 54/58 (93%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                     
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||
Sbjct: 81  atcaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaacggaggaagtat 137



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           |||| ||||| ||||||||||||||| ||||||||||||  | |||||||||||||
Sbjct: 136 tacttcctccgtttcacaatataagtcattctagcatttcccacattcatattgat 81



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 56/63 (88%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           ||||| |||||||| ||||||| ||||| |||||||| ||||||| |||||||||||| |
Sbjct: 66  attaatatcaatataaatgtggaaaatgctagaatgacttacatt-gtgaaacggaggga 8

              
Query: 165 gta 167
           |||
Sbjct: 7   gta 5




>RF00906;MIR1122;AP008210.1/12565127-12564978 39947:Oryza sativa
           Japonica Group
          Length = 150

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||||
Sbjct: 78  tagattcattaacatcaatatgaatgtgggaaatggtaaaatgacttaca-ttatgaaac 136

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 137 ggagggagta 146



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 125/156 (80%), Gaps = 13/156 (8%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||| ||| ||||| ||| || |||||  | ||||||||||||||||
Sbjct: 147 ctactccctccgtttcataatgtaagtcattttaccatttcccacattcatattgatgtt 88

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||||             ||||||||||||||||||||||||| | | ||||
Sbjct: 87  aatgaatctagatc------------tagattcattaacatcaatatgaatatagtaaat 40

                                               
Query: 132 gttagaatgatttacatttgtgaaacggaggaagta 167
           | |||||||| ||| | ||||| |||||||||||||
Sbjct: 39  gctagaatgacttata-ttgtggaacggaggaagta 5




>RF00906;MIR1122;AACV01021328.1/31319-31454 39947:Oryza sativa
           Japonica Group
          Length = 136

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 55/58 (94%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                     
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 77  atcaatatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggaggaagtat 133



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||||||||| ||||||||||||  | |||||||||| ||| ||
Sbjct: 5  tactccctccgtttcacaatataagtcattctagcatttcccacattcatattaatgcta 64

                       
Query: 73 ataaatctagata 85
          || ||||||||||
Sbjct: 65 atgaatctagata 77



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||| ||||||||||||||||||| |||||||| ||| | |||||||||
Sbjct: 73  tagattcattagcattaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           |||| ||||| ||||||||| ||||| ||||||||||||  | |||||||||||||
Sbjct: 132 tacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgat 77




>RF00906;MIR1122;AACV01010803.1/31756-31905 39947:Oryza sativa
           Japonica Group
          Length = 150

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 126/155 (81%), Gaps = 13/155 (8%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||| |||||||  ||| ||||||||| ||
Sbjct: 5   tactccctccgtttcacaatgtaagtcattctagtatttttcatatttatattgatgcta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||||             || |||||||| ||||||||||||||| | |||||
Sbjct: 65  atgaatctagatc------------taaattcattagcatcaatatgaatgtagaaaatg 112

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            |||||||||||||| |||||||||||||| ||||
Sbjct: 113 ctagaatgatttaca-ttgtgaaacggagggagta 146



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||| | |||||||||||||   |||||||||||||| ||
Sbjct: 146 tactccctccgtttcacaatgtaaatcattctagcattttctacattcatattgatgcta 87

                       
Query: 73  ataaatctagat 84
           || ||| |||||
Sbjct: 86  atgaatttagat 75



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 63/73 (86%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||||||| ||| ||  ||||  |||||||| ||||| |||||||||
Sbjct: 73  tagattcattagcatcaatataaatatgaaaaatactagaatgacttaca-ttgtgaaac 15

                        
Query: 158 ggaggaagtatat 170
           ||||| |||||||
Sbjct: 14  ggagggagtatat 2




>RF00906;MIR1122;AACV01023525.1/7783-7916 39947:Oryza sativa
           Japonica Group
          Length = 134

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||||| | |  ||||||||||||
Sbjct: 130 tacttcctccgtttcacaatgtaagtcattctagcatttttcacgtatatattgatgtta 71

                             
Query: 73  ataaatctagatagatat 90
           || |||||||||||||||
Sbjct: 70  atgaatctagatagatat 53



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||  | |||  ||||| |||||||| ||||| |||||||||
Sbjct: 62  tagattcattaacatcaatatatacgtgaaaaatgctagaatgacttaca-ttgtgaaac 120

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 121 ggaggaagta 130




>RF00906;MIR1122;AP008208.1/10509261-10509100 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||||| ||||||||| || ||||||| ||| |||||| |||||||||||||||| ||
Sbjct: 114 attcatatagatgttaatgaacctagatatatacatatgtctagattcattaacatctat 55

                     
Query: 117 atgaatgtgg 126
           ||||||||||
Sbjct: 54  atgaatgtgg 45



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   || ||| ||| | | ||||||||| |||||||
Sbjct: 5   tactccctccgtttcacaatgtaagactttttaggattgtccacattcatatagatgtta 64

                                                                  
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtggg 127
           || |||||||| | || ||||| | ||| |||||||||||| |||||||| ||||
Sbjct: 65  atgaatctagacatatgtatatatctaggttcattaacatctatatgaatatggg 119




>RF00906;MIR1122;AC108504.2/79804-79643 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 88/102 (86%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                       
Query: 66  gatgttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtg 125
           ||||||||| |||||||| | |||||| |||||||||||||||||||| | |||||||||
Sbjct: 105 gatgttaatgaatctagacatatatatgtgtttagattcattaacatctaaatgaatgtg 46

                                                     
Query: 126 ggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           || |||| ||||| |  || || || ||||||||||||||||
Sbjct: 45  ggtaatgctagaaagtcttgca-ttatgaaacggaggaagta 5



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatc 113
           ||||||| | ||||||||| |||||| | | |||||||||| ||||||||||||||||
Sbjct: 48  cattcatttagatgttaatgaatctaaacacatatatatgtctagattcattaacatc 105




>RF00906;MIR1122;AP005701.3/56841-57000 39947:Oryza sativa Japonica
           Group
          Length = 160

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 127/153 (83%), Gaps = 3/153 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||||||||| ||||||| |||   | ||||| ||| |||  |
Sbjct: 157 ctactccctccgtttcacaatataagtcattctaggattgcccacattcttatagatact 98

                                                                       
Query: 72  aataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           ||| |||||||  | ||||||  ||  ||||||||||||||| ||||||||||||| |||
Sbjct: 97  aatgaatctagccacatatat--gtccagattcattaacatctatatgaatgtgggcaat 40

                                            
Query: 132 gttagaatgatttacatttgtgaaacggaggaa 164
           | |||||||| ||| | || |||||||||||||
Sbjct: 39  gctagaatgacttata-ttatgaaacggaggaa 8



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 123/150 (82%), Gaps = 3/150 (2%)
 Strand = Plus / Plus

                                                                       
Query: 18  cctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaataaa 77
           ||||| ||||| ||||||||| |||||||||||   | ||||||||| ||||||||| ||
Sbjct: 10  cctccgtttcataatataagtcattctagcattgcccacattcatatagatgttaatgaa 69

                                                                       
Query: 78  tctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttaga 137
           ||| |  | |||||| ||  |||||||||||  ||| ||| ||||||||| |||  ||||
Sbjct: 70  tctgg--acatatatgtggctagattcattagtatctataagaatgtgggcaatcctaga 127

                                         
Query: 138 atgatttacatttgtgaaacggaggaagta 167
           |||| ||| | |||||||||||||| ||||
Sbjct: 128 atgacttata-ttgtgaaacggagggagta 156




>RF00906;MIR1122;AP000570.1/734-847 39947:Oryza sativa Japonica
           Group
          Length = 114

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||| | |||||||||| |||||||||| ||||| |
Sbjct: 24  cattcatatagatgttaatgaatctagacacatatatatgtctagattcatttacatcta 83

                     
Query: 116 tatgaatgtg 125
           ||||||||||
Sbjct: 84  tatgaatgtg 93



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||| ||| |||||||| | |||||| ||| |||||||||||||||| |
Sbjct: 91  cattcatatagatgtaaatgaatctagacatatatatgtgtctagattcattaacatcta 32

                       
Query: 116 tatgaatgtggg 127
           ||||||||||||
Sbjct: 31  tatgaatgtggg 20




>RF00906;MIR1122;AAAA02032505.1/38201-38060 39946:Oryza sativa
           Indica Group
          Length = 142

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| |||||||||| |||| |||||||||||| |||||| |||||||| ||||| |
Sbjct: 62  tatatgtctagattcattgacataaatatgaatgtgagaaatgctagaatgacttaca-t 120

                        
Query: 150 tgtgaaacggagg 162
           |||||||||||||
Sbjct: 121 tgtgaaacggagg 133



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 16  tccctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaata 75
           ||||||| ||||||||| ||||| |||||||||||| || |||||||||| |||| ||| 
Sbjct: 135 tccctccgtttcacaatgtaagtcattctagcatttctcacattcatatttatgtcaatg 76

                   
Query: 76  aatctaga 83
           ||||||||
Sbjct: 75  aatctaga 68



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                 
Query: 16 tccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          ||||||| ||||||||| ||||| |||||||||||| || |||||||||||||||
Sbjct: 8  tccctccgtttcacaatgtaagtcattctagcatttctcacattcatattgatgt 62



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagg 162
           ||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 62  acatcaatatgaatgtgagaaatgctagaatgacttaca-ttgtgaaacggagg 10




>RF00906;MIR1122;AACV01010533.1/25208-25336 39947:Oryza sativa
           Japonica Group
          Length = 129

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                    
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           ||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 126 ctactccctccgtttcacaatgtaagttattctagcattttccacattcatattgat 70



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagttattctagcattttccacattcatattgat 60



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||| ||||| |||||| | ||||| |||||||||||||| |||||
Sbjct: 60  atcaatatgaatgtggaaaatgctagaataacttaca-ttgtgaaacggagggagtat 4



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 51/57 (89%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||| ||||| |||||| | ||||| |||||||||||||| ||||
Sbjct: 70  atcaatatgaatgtggaaaatgctagaataacttaca-ttgtgaaacggagggagta 125




>RF00906;MIR1122;AAAA02009878.1/28326-28188 39946:Oryza sativa
           Indica Group
          Length = 139

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  agattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacg 158
           |||||||||| |||||||||||||||| |||||| |||||||| ||| | ||||||||||
Sbjct: 68  agattcattagcatcaatatgaatgtgagaaatgctagaatgacttata-ttgtgaaacg 126

                    
Query: 159 gaggaagta 167
           |||||||||
Sbjct: 127 gaggaagta 135



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| |||||||||||| || |||||||||||||| ||
Sbjct: 135 tacttcctccgtttcacaatataagtcattctagcatttctcacattcatattgatgcta 76

                   
Query: 73  ataaatct 80
           || |||||
Sbjct: 75  atgaatct 68



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          ||||||||||  |||||| || ||||| |||||||||||| || |||||||||||||| |
Sbjct: 4  ctactccctctgtttcacgatgtaagtcattctagcatttctcacattcatattgatgct 63

             
Query: 72 aat 74
          |||
Sbjct: 64 aat 66



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 103 tcattaacatcaatatgaatgtgggaaatgttagaatgatttacat 148
           |||||| |||||||||||||||| |||||| |||||||| ||||||
Sbjct: 68  tcattagcatcaatatgaatgtgagaaatgctagaatgacttacat 23




>RF00906;MIR1122;AL731751.4/92313-92451 4530:Oryza sativa (rice)
          Length = 139

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  agattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacg 158
           ||||||||||| |||||| ||||||||||||||| |||||||| ||| | ||||||||||
Sbjct: 68  agattcattaatatcaatgtgaatgtgggaaatgctagaatgacttata-ttgtgaaacg 126

                    
Query: 159 gaggaagta 167
           |||||||||
Sbjct: 127 gaggaagta 135



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 11 actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||||||||||| ||||||||||||||| ||||||||||||  | |||||| |||||| |
Sbjct: 3  actactccctccgtttcacaatataagtcattctagcatttcacacattcacattgatat 62

              
Query: 71 taat 74
          ||||
Sbjct: 63 taat 66



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||| ||||| ||||||||||||||| ||||||||||||  | |||||| |||||| ||
Sbjct: 136 ctacttcctccgtttcacaatataagtcattctagcatttcccacattcacattgatatt 77

                    
Query: 72  aataaatct 80
           ||| |||||
Sbjct: 76  aatgaatct 68



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 57/65 (87%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 103 tcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagg 162
           ||||||| |||||| |||||||| |||||| |||||||| ||| ||| ||||||||||||
Sbjct: 68  tcattaatatcaatgtgaatgtgtgaaatgctagaatgacttatatt-gtgaaacggagg 10

                
Query: 163 aagta 167
            ||||
Sbjct: 9   gagta 5




>RF00906;MIR1122;AAAA02030781.1/9759-9620 39946:Oryza sativa Indica
           Group
          Length = 140

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 72/81 (88%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                       
Query: 88  tatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttaca 147
           |||| |||| |||||| |||||||||||||||||| ||||||||| || ||||| || ||
Sbjct: 58  tataaatgtctagatttattaacatcaatatgaatatgggaaatgctaaaatgacttgca 117

                                
Query: 148 tttgtgaaacggaggaagtat 168
            ||||||||||||||||||||
Sbjct: 118 -ttgtgaaacggaggaagtat 137



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| |||||||||  |||| ||| ||||||||  |  ||||||||||||||||
Sbjct: 136 tacttcctccgtttcacaatgcaagtcattttagcatttcccatattcatattgatgtta 77

                      
Query: 73  ataaatctaga 83
           |||||||||||
Sbjct: 76  ataaatctaga 66



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 118 tgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||  |||||| | ||||||| |||||||||||||||||
Sbjct: 53  tgaatgtgggaaatactagaataacttacatt-gtgaaacggaggaagta 5



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||| ||||| ||||||||| ||||||||||||| ||||
Sbjct: 5  tacttcctccgtttcacaatgtaagttattctagtattt 43




>RF00906;MIR1122;AP005688.3/36085-35944 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| |||||||||||||    ||||||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattttctatattcatattgatgtta 64

                       
Query: 73 ataaatctagata 85
          || ||||||||||
Sbjct: 65 atgaatctagata 77



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||| | | ||||| |||||||| ||||| |||||||||
Sbjct: 73  tagattcattaacatcaatatgaatatagaaaatgctagaatgacttaca-ttgtgaaac 15

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 14  ggagggagta 5



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 60/66 (90%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           |||||||||||||||||||| ||||||  |||||||| ||| | ||||||||||||||||
Sbjct: 77  attaacatcaatatgaatgtaggaaatagtagaatgacttata-ttgtgaaacggaggaa 135

                 
Query: 165 gtatat 170
           ||||||
Sbjct: 136 gtatat 141



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||||||  ||||    |||||||||||||||||
Sbjct: 138 tacttcctccgtttcacaatataagtcattctactatttcctacattcatattgatgtta 79

              
Query: 73  ata 75
           |||
Sbjct: 78  ata 76




>RF00906;MIR1122;AAAA02000417.1/68495-68635 39946:Oryza sativa
           Indica Group
          Length = 141

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                   
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttaga 137
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tagattcattaacatcaatatgaatgtgggaaatgttaga 35



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 53/57 (92%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 82  atcaatatgaatatgggaaatgctagaatgacttaca-ttgtgaaacggaggaagta 137



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 cattcatattgatgttaataaatctagatagatat 90
          ||||||||||||||||||| |||||||||||||||
Sbjct: 49 cattcatattgatgttaatgaatctagatagatat 83



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           |||| ||||| ||||||||| ||||| ||||||||||||  |  ||||||||||||
Sbjct: 137 tacttcctccgtttcacaatgtaagtcattctagcatttcccatattcatattgat 82




>RF00906;MIR1122;AAAA02008053.1/17150-17309 39946:Oryza sativa
           Indica Group
          Length = 160

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 95/111 (85%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||| | ||||||||| |||||||| |  ||| | ||| |||||||||||||||| ||
Sbjct: 112 attcatctagatgttaatgaatctagaca--tatgtgtgtctagattcattaacatctat 55

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||| |||| ||||| || ||||| || ||||||||||||||||
Sbjct: 54  atgaatgtgggcaatgctagaaagacttaca-ttatgaaacggaggaagta 5



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 90/110 (81%), Gaps = 2/110 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||| ||| |||||  ||||||||||   | ||||||||| |||||||
Sbjct: 5   tacttcctccgtttcataatgtaagtctttctagcattgcccacattcatatagatgtta 64

                                                             
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaat 122
           || |||||||| | | ||||  || |||||||||||||||| | ||||||
Sbjct: 65  atgaatctagacacacatat--gtctagattcattaacatctagatgaat 112




>RF00906;MIR1122;AP004861.3/24137-24005 39947:Oryza sativa Japonica
           Group
          Length = 133

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                       
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttac 146
           |||||||||| |||||||||||||||| | ||||||||||  |||| ||||| |  ||||
Sbjct: 84  atatatatgtctagattcattaacatctaaatgaatgtggataatgctagaaagtcttac 25

                                   
Query: 147 atttgtgaaacggaggaagtatat 170
           | ||||||||||||||||||||||
Sbjct: 24  a-ttgtgaaacggaggaagtatat 2




>RF00906;MIR1122;AL606444.3/32464-32336 39947:Oryza sativa
          Japonica Group
          Length = 129

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagttattctagcattttccacattcatattgat 60



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           ||||||||||| ||||||||| ||||||||||||||||||  | |||||||||||||
Sbjct: 126 ctactccctccgtttcacaatgtaagttattctagcatttnccacattcatattgat 70



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||| ||||| |||||| | ||||| |||||||||||||| |||||
Sbjct: 60  atcaatatgaatgtggaaaatgctagaataacttaca-ttgtgaaacggagggagtat 4



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 51/57 (89%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||| ||||| |||||| | ||||| |||||||||||||| ||||
Sbjct: 70  atcaatatgaatgtggnaaatgctagaataacttaca-ttgtgaaacggagggagta 125




>RF00906;MIR1122;AP006159.3/37361-37232 39947:Oryza sativa
          Japonica Group
          Length = 130

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||||||||||||||||||||||  | |||||| ||||||||||
Sbjct: 5  tactccctccgtttcacaatataagttattctagcatttcccacattcacattgatgtta 64



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                       
Query: 107 taacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagt 166
           |||||||||| ||||||||||||||| |||||| | ||| | |||||||||||||| |||
Sbjct: 64  taacatcaatgtgaatgtgggaaatgctagaataacttata-ttgtgaaacggagggagt 6

            
Query: 167 a 167
           |
Sbjct: 5   a 5



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 127 gaaatgttagaatgatttacatttgtgaaacggaggaagtatat 170
           |||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct: 87  gaaatgctagaatgacttacatt-gtgaaacggaggaagtatat 129



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 13  tactccctccatttcacaatataagttattctagcattt 51
           |||| ||||| ||||||||| ||||| ||||||||||||
Sbjct: 126 tacttcctccgtttcacaatgtaagtcattctagcattt 88




>RF00906;MIR1122;AAAA02024426.1/6236-6378 39946:Oryza sativa Indica
           Group
          Length = 143

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| ||||||||||| ||||||||| ||| || |||||| || ||||| ||||| |
Sbjct: 81  tatatgtctagattcattagcatcaatataaatatgagaaatgctaaaatgacttaca-t 23

                              
Query: 150 tgtgaaacggaggaagtat 168
           |||||||||||||||||||
Sbjct: 22  tgtgaaacggaggaagtat 4



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           |||||||||| ||||||||||||||| ||| ||||||||| | ||||||||||||||
Sbjct: 139 tactccctccgtttcacaatataagtcattttagcattttccacattcatattgatg 83



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                      
Query: 110 catcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||||||||||||||| ||||| || ||||| ||| | |||||||||||||| |||||
Sbjct: 83  catcaatatgaatgtggaaaatgctaaaatgacttata-ttgtgaaacggagggagtat 140




>RF00906;MIR1122;AAAA02007431.1/93040-92879 39946:Oryza sativa
           Indica Group
          Length = 162

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 94/111 (84%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||||| ||||||||| ||| |||| |   |||||||| |||||||||||||||| ||
Sbjct: 49  attcatatagatgttaatgaatttagacacgcatatatgtctagattcattaacatctat 108

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||| |||  ||||| |  ||||| |||||||||||||| ||||
Sbjct: 109 atgaatgtgggcaatactagaaagtcttaca-ttgtgaaacggagggagta 158



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   |||||| |||   | ||||||||| |||||||
Sbjct: 158 tactccctccgtttcacaatgtaagactttctagtattgcccacattcatatagatgtta 99

                                                                  
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtggg 127
           || |||||||| | ||||   ||| || ||||||||||||| |||||||| ||||
Sbjct: 98  atgaatctagacatatatgcgtgtctaaattcattaacatctatatgaatatggg 44




>RF00906;MIR1122;AP003298.3/138453-138292 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 127/155 (81%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||   ||||||||||  ||  || ||||| || ||||
Sbjct: 5   tactccctccgtttcacaatgtaagactttctagcattgctcatatacatatagacgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| | | ||| |||||| |||||||||||||||| | |||||| |||| ||||
Sbjct: 65  atgaatctaaacacatacatatgtctagattcattaacatctaaatgaatatgggcaatg 124

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
            || || |  ||||| |||||||||||||||||||
Sbjct: 125 ctaaaaagtcttaca-ttgtgaaacggaggaagta 158



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 92/111 (82%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||| | ||||||||| |||||||| | || ||| ||||||||||||||||| || ||
Sbjct: 114 attcatttagatgttaatgaatctagacatatgtatgtgtttagattcattaacgtctat 55

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| || || | |||| ||||| |  ||||| |||||||||||||| ||||
Sbjct: 54  atgtatatgagcaatgctagaaagtcttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AACV01016474.1/3638-3773 39947:Oryza sativa
           Japonica Group
          Length = 136

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 18  cctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaataaa 77
           ||||| ||||||||||||||| ||| ||||||||| || ||||||||||||| |||| ||
Sbjct: 127 cctccgtttcacaatataagtcattttagcattttccgtattcatattgatgataatgaa 68

                          
Query: 78  tctagatagatatat 92
           |||||| | ||||||
Sbjct: 67  tctagacatatatat 53



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 70/80 (87%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                       
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttac 146
           |||||||||| ||||||||||| |||||||||||||  || ||||| || ||||| ||| 
Sbjct: 53  atatatatgtctagattcattatcatcaatatgaatacggaaaatgctaaaatgacttat 112

                               
Query: 147 atttgtgaaacggaggaagt 166
           | ||||||||||||||||||
Sbjct: 113 a-ttgtgaaacggaggaagt 131



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 24 tttcacaatataagttattctagcatttttcgcattcatat 64
          ||||||||| ||||| ||||||||||||  |||||||||||
Sbjct: 16 tttcacaatgtaagtcattctagcatttcccgcattcatat 56




>RF00906;MIR1122;CR855219.1/67862-67748 4530:Oryza sativa (rice)
          Length = 115

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 55/59 (93%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 62  acatcaatatgaatgtgagaaatgctagaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                      
Query: 11 actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||||| ||||| ||||||||| ||||| |||||||||||| || |||||||||||||||
Sbjct: 3  actacttcctccgtttcacaatgtaagtcattctagcatttctcacattcatattgatgt 62



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 10  tactactccctccatttcacaatataagttattctagcat 49
           ||||||||||||| ||||||||| ||||| | ||||||||
Sbjct: 114 tactactccctccgtttcacaatgtaagtcaatctagcat 75




>RF00906;MIR1122;AP008217.1/6615240-6615106 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 64/71 (90%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           |||||||||||||||||| || |||  ||||| |||||||| ||||| ||||||||||||
Sbjct: 66  attcattaacatcaatataaacgtgaaaaatgctagaatgacttaca-ttgtgaaacgga 124

                      
Query: 161 ggaagtatatg 171
           |||||||||||
Sbjct: 125 ggaagtatatg 135



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||| ||||||||||||||| | || ||||||||||||
Sbjct: 131 tacttcctccgtttcacaatgtaagtcattctagcatttttcacgtttatattgatgtta 72

             
Query: 73  at 74
           ||
Sbjct: 71  at 70




>RF00906;MIR1122;AAAA02035929.1/12415-12280 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 55/59 (93%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                      
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||
Sbjct: 75  acatcaatatgaatgtgggaaatgctagaatgtcttaca-ttgtgaaacggaggaagta 132



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                       
Query: 93  atgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgt 152
           |||| ||||||||||| ||||||||| ||| ||||||||| || ||||| ||||| ||||
Sbjct: 78  atgtctagattcattagcatcaatataaatatgggaaatgctataatgacttaca-ttgt 20

                           
Query: 153 gaaacggaggaagtat 168
           | |||||||| |||||
Sbjct: 19  ggaacggagggagtat 4



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           ||||| ||||| ||||||||| ||||  ||||||||||||  | |||||||||||||||
Sbjct: 133 ctacttcctccgtttcacaatgtaagacattctagcatttcccacattcatattgatgt 75




>RF00906;MIR1122;AP008216.1/19603826-19603676 39947:Oryza sativa
           Japonica Group
          Length = 151

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||| ||| |||| || |||||||||||||||||
Sbjct: 147 tactccctccgtttcacaatgtaagtcattttagtatttctcacattcatattgatgtta 88

                      
Query: 73  ataaatctaga 83
           || ||||||||
Sbjct: 87  atgaatctaga 77



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||||||||||||||| |||||  || ||||| ||||| |||||||||
Sbjct: 79  tagattcattaacatcaatatgaatgtgagaaatactaaaatgacttaca-ttgtgaaac 137

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 138 ggagggagta 147




>RF00906;MIR1122;AL662959.3/120503-120618 39947:Oryza sativa
           Japonica Group
          Length = 116

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttag 136
           |||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 50  atatatatgtctagtttcattagcatcaatatgaatgtgggaaatgttag 1



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttag 136
           |||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct: 67  atatatatgtctagatttattagcatcaatatgaatgtgggaaatgttag 116



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 56  cattcatattgatgttaataaatctagatagatatat 92
           |||||||||||||| ||||||||||||| | ||||||
Sbjct: 103 cattcatattgatgctaataaatctagacatatatat 67




>RF00906;MIR1122;AC223445.1/72991-73152 4538:Oryza glaberrima
           (African rice)
          Length = 162

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 104/126 (82%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| | ||||||   ||||||||||   | || |||||| |||||||
Sbjct: 5   tactccctccgtttcatattataagactttctagcattgcccacaatcatatagatgtta 64

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || || ||| | | |||||||||| ||||||||||| |||| ||||||||||||| ||||
Sbjct: 65  atgaacctatacacatatatatgtctagattcattagcatctatatgaatgtgggcaatg 124

                 
Query: 133 ttagaa 138
            |||||
Sbjct: 125 ctagaa 130



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| |||| |||| |||||||| | |||||| ||| ||| |||||||||||| |
Sbjct: 115 cattcatatagatgctaatgaatctagacatatatatgtgtataggttcattaacatcta 56

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           ||||| |||||| |||| |||||
Sbjct: 55  tatgattgtgggcaatgctagaa 33




>RF00906;MIR1122;AAAA02027852.1/19341-19475 39946:Oryza sativa
           Indica Group
          Length = 135

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| |||||| |||||||| | |||||||||||| ||
Sbjct: 131 tactccctccgtttcacaatgtaagtcattctatcatttttcacgttcatattgatgcta 72

                     
Query: 73  ataaatctag 82
           || |||||||
Sbjct: 71  atgaatctag 62



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 63/71 (88%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| |||||||||||| |||  ||||| |||||||| ||||| |||||||||
Sbjct: 63  tagattcattagcatcaatatgaacgtgaaaaatgatagaatgacttaca-ttgtgaaac 121

                      
Query: 158 ggaggaagtat 168
           ||||| |||||
Sbjct: 122 ggagggagtat 132



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                           
Query: 16 tccctccatttcacaatataagttattctagcatttttcgcattcatat 64
          ||||||| ||||||||||||||| |||||| ||||| ||  ||||||||
Sbjct: 8  tccctccgtttcacaatataagtcattctatcatttctcaaattcatat 56




>RF00906;MIR1122;AL606694.3/113643-113765 39947:Oryza sativa
           Japonica Group
          Length = 123

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 84  tagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           ||||||||| | | ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 63  tagatatatctatctagatacattaacatcaatatgaatgtgggaaatgctagaatga 120



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 47  tagatacattaacatcaatatgaatgtgggaaatgctagaatga 4



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 35  aagttattctagcatttttcgcattcatattgatgttaataaatctagatagatatat 92
           |||| ||||||||||||  | |||||||||||||||||||  ||||||||||||||||
Sbjct: 123 aagtcattctagcatttcccacattcatattgatgttaatgtatctagatagatatat 66




>RF00906;MIR1122;FJ266028.1/154978-155117 4529:Oryza rufipogon
          Length = 140

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| ||||||||||||  | |||| |||||||| |||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcatttcccacatttatattgatatta 64

                            
Query: 73 ataaatctagatagatat 90
          |||||| |||||| ||||
Sbjct: 65 ataaatttagataaatat 82



 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 54/58 (93%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                     
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||
Sbjct: 81  atcaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaacggaggaagtat 137



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 57/63 (90%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           ||||| |||||||| ||||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 66  attaatatcaatataaatgtgggaaatgctagaatgacttaca-ttgtgaaacggaggga 8

              
Query: 165 gta 167
           |||
Sbjct: 7   gta 5



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           |||| ||||| ||||||||||||||| ||||||||||||  | |||||||||||||
Sbjct: 136 tacttcctccgtttcacaatataagtcattctagcatttcccacattcatattgat 81




>RF00906;MIR1122;AACV01018808.1/29876-29745 39947:Oryza sativa
          Japonica Group
          Length = 132

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| ||| ||||||||| | |||||||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattttagcattttccacattcatattgatgtta 64

            
Query: 73 at 74
          ||
Sbjct: 65 at 66



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 59/65 (90%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 103 tcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagg 162
           |||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 68  tcattaacatcaatatgaatgtggaaaatgctaaaatgacttaca-ttgtgaaacggagg 10

                
Query: 163 aagta 167
            ||||
Sbjct: 9   gagta 5



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 128 tactccctccgtttcacaatgtaatttattttagcattttccacattcatattgatgtta 69



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                       
Query: 107 taacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagt 166
           |||||||||||||||||||| ||||| || ||| | ||||| |||||||||||||| |||
Sbjct: 69  taacatcaatatgaatgtggaaaatgctaaaataaattaca-ttgtgaaacggagggagt 127

            
Query: 167 a 167
           |
Sbjct: 128 a 128




>RF00906;MIR1122;AAAA02032498.1/8257-8124 39946:Oryza sativa Indica
           Group
          Length = 134

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||||||||||||||||| ||||  || ||||| ||| | |||||||||
Sbjct: 62  tagattcattaacatcaatatgaatgtggaaaatactaaaatgacttata-ttgtgaaac 120

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 121 ggaggaagta 130



 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||| ||| ||||| | |||||||||||||||||
Sbjct: 130 tacttcctccgtttcacaatataagtcattttagtattttccacattcatattgatgtta 71

                    
Query: 73  ataaatcta 81
           || ||||||
Sbjct: 70  atgaatcta 62



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                    
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||||||||| ||||||||| ||||| ||| | | ||||| | |||||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcatttttgtattttccacattcatattgatgt 62



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 52/60 (86%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                       
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||||| ||||   | ||||| ||||| |||||||||||||| |||||
Sbjct: 62  acatcaatatgaatgtggaaaatacaaaaatgacttaca-ttgtgaaacggagggagtat 4




>RF00906;MIR1122;AP004801.3/81541-81678 39947:Oryza sativa Japonica
           Group
          Length = 138

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||||||| ||||||||| ||| ||||| ||||| || ||||| |||||||||
Sbjct: 66  tagattcattaacattaatatgaatatggaaaatgctagaaggacttaca-ttgtgaaac 124

                     
Query: 158 ggaggaagta 167
           ||||||||||
Sbjct: 125 ggaggaagta 134



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| |||||  |||||||||||| |  ||||||||| ||||||
Sbjct: 134 tacttcctccgtttcacaatgtaagtccttctagcattttccatattcatattaatgtta 75

                                  
Query: 73  ataaatctagatagatatatatg 95
           || |||||||||  |||||||||
Sbjct: 74  atgaatctagatgaatatatatg 52



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||
Sbjct: 56  atatgaatgtggaaaatgatagaatgacttaca-ttatgaaacggagggagta 5




>RF00906;MIR1122;AAAA02013760.1/16919-16808 39946:Oryza sativa
           Indica Group
          Length = 112

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 77/89 (86%), Gaps = 6/89 (6%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagata----gatat--atatgtttagattcattaa 109
           ||||||||| ||||||||| ||||||||||    |||||  || ||| ||||||||||||
Sbjct: 20  cattcatatggatgttaatgaatctagatatatggatattaatgtgtctagattcattaa 79

                                        
Query: 110 catcaatatgaatgtgggaaatgttagaa 138
           |||| ||||||||||||| ||||||||||
Sbjct: 80  catccatatgaatgtgggcaatgttagaa 108



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||||||||||||||| ||||||||||||| |||| |||||
Sbjct: 45  tagattcattaacatccatatgaatgtgggcaatgctagaa 5




>RF00906;MIR1122;AACV01007157.1/75909-76016 39947:Oryza sativa
           Japonica Group
          Length = 108

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 89  atatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           |||||||| ||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 48  atatatgtctagattcattagcatcaatatgaatgtgagaaatgctagaatga 100



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 97/120 (80%), Gaps = 12/120 (10%)
 Strand = Plus / Minus

                                                                       
Query: 30  aatataagttattctagcatttttcgcattcatattgatgttaataaatctagatagata 89
           ||||||||| |||||||||||| || |||||||||||||| |||| |||||||| |    
Sbjct: 108 aatataagtcattctagcatttctcacattcatattgatgctaatgaatctagaca---- 53

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
                   || |||||||| |||||||||||||||| |||||| |||||||| |||||||
Sbjct: 52  --------tatattcattagcatcaatatgaatgtgagaaatgctagaatgacttacatt 1




>RF00906;MIR1122;AP005308.3/147987-147826 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                       
Query: 58  ttcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaata 117
           ||||||| ||||| ||| |||||| | | |||||||||| |||||||||| ||||  |||
Sbjct: 113 ttcatatagatgtcaatgaatctaaacacatatatatgtctagattcattgacatatata 54

                                
Query: 118 tgaatgtgggaaatgttagaa 138
           |||||||||| ||||||||||
Sbjct: 53  tgaatgtgggcaatgttagaa 33



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||||||  |||| ||| |||||||| | |||||| |||||||||||||| ||||| |
Sbjct: 48  cattcatatatatgtcaatgaatctagacatatatatgtgtttagattcattgacatcta 107

                 
Query: 116 tatgaa 121
           ||||||
Sbjct: 108 tatgaa 113




>RF00906;MIR1122;AAAA02004941.1/49677-49840 39946:Oryza sativa
           Indica Group
          Length = 164

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 86/101 (85%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                       
Query: 67  atgttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgg 126
           |||||||| |||||| | | ||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 104 atgttaatgaatctaaacacatacatatgtttagattcattaacatctaaatgaatgtgg 45

                                                    
Query: 127 gaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           | |||| ||||| |  ||||| ||||||||| |||| ||||
Sbjct: 44  gtaatgctagaaagtcttaca-ttgtgaaacagagggagta 5



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 82/100 (82%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||  ||||||||| ||||   ||||||||||   | ||||||| | |||||||
Sbjct: 5   tactccctctgtttcacaatgtaagactttctagcattacccacattcatttagatgtta 64

                                                   
Query: 73  ataaatctagatagatatatatgtttagattcattaacat 112
           || |||||| | | || ||| |||||||||||||||||||
Sbjct: 65  atgaatctaaacatatgtatgtgtttagattcattaacat 104




>RF00906;MIR1122;AAAA02007011.1/474-313 39946:Oryza sativa Indica
           Group
          Length = 162

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||||||  |||||||| |||||||| | | ||||||||||||||||||| | ||| |
Sbjct: 48  cattcatatatatgttaatgaatctagacacacatatatgtttagattcattgatatcta 107

                            
Query: 116 tatgaatgtgggaaatg 132
           |||||||||||| ||||
Sbjct: 108 tatgaatgtgggcaatg 124



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 92/113 (81%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||| | ||| |||||| | | |||| | ||| |||||||||||||||  |
Sbjct: 115 cattcatatagatatcaatgaatctaaacatatatgtgtgtctagattcattaacatata 56

                                                                
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||| || | ||||| |  ||||| || |||||| ||||||||||
Sbjct: 55  tatgaatgtgggcaaggctagaaagtcttaca-ttatgaaaccgaggaagtat 4




>RF00906;MIR1122;AAAA02024471.1/543-453 39946:Oryza sativa Indica
           Group
          Length = 91

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 66/75 (88%), Gaps = 3/75 (4%)
 Strand = Plus / Plus

                                                                       
Query: 58  ttcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaata 117
           ||||||||||| ||||| ||||||||||||||||    | |||||||||||| |||||||
Sbjct: 16  ttcatattgatattaatgaatctagatagatataa---tctagattcattaatatcaata 72

                          
Query: 118 tgaatgtgggaaatg 132
           |||| ||||||||||
Sbjct: 73  tgaacgtgggaaatg 87



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 65/75 (86%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                       
Query: 58  ttcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaata 117
           ||||||||||| ||||| |||||||||   ||||| | | |||||||||||| |||||||
Sbjct: 76  ttcatattgatattaatgaatctagat---tatatctatctagattcattaatatcaata 20

                          
Query: 118 tgaatgtgggaaatg 132
           |||| ||||||||||
Sbjct: 19  tgaacgtgggaaatg 5




>RF00906;MIR1122;AAAA02004833.1/5259-5122 39946:Oryza sativa Indica
           Group
          Length = 138

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           |||||| |||||| ||||||||| ||||||||||||| |||| ||||| |  ||||| ||
Sbjct: 59  atatgtctagatttattaacatctatatgaatgtgggcaatgctagaaagtcttaca-tt 117

                            
Query: 151 gtgaaacggaggaagta 167
           |||||||||||||||||
Sbjct: 118 gtgaaacggaggaagta 134



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 11  actactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           |||||| ||||| ||||||||| ||||   ||||||||||   | ||||||||| |||||
Sbjct: 136 actacttcctccgtttcacaatgtaagactttctagcattgcccacattcatatagatgt 77

                        
Query: 71  taataaatctaga 83
           |||||||||||||
Sbjct: 76  taataaatctaga 64




>RF00906;MIR1122;AAAA02007268.1/12026-11902 39946:Oryza sativa
           Indica Group
          Length = 125

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 62/69 (89%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                       
Query: 102 ttcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggag 161
           ||||||||||||| ||| ||||||||||||| |||||||| ||| | |||||||||||||
Sbjct: 57  ttcattaacatcagtataaatgtgggaaatgctagaatgacttaga-ttgtgaaacggag 115

                    
Query: 162 gaagtatat 170
           | |||||||
Sbjct: 116 ggagtatat 124



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct: 57  aatatgaatgtgggaaatgctaaaatgacttaca-ttgtgaaacggaggaagta 5



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||||||| ||||| ||||||||||||  | |||| ||| ||||||||
Sbjct: 121 tactccctccgtttcacaatctaagtcattctagcatttcccacatttatactgatgtta 62

             
Query: 73  at 74
           ||
Sbjct: 61  at 60




>RF00906;MIR1122;AACV01015348.1/13831-13958 39947:Oryza sativa
          Japonica Group
          Length = 128

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||||||||| ||| ||||   |||||||||| | | ||||||||| |||||||
Sbjct: 5  tactccctccatttcataatgtaagactttctagcattgtccacattcatatagatgtta 64

                       
Query: 73 ataaatctagata 85
          |||||||||||||
Sbjct: 65 ataaatctagata 77



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 62/74 (83%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||| ||||||||| ||||||||||||  |||| ||||| |  ||||| || ||||| 
Sbjct: 73  tagatttattaacatctatatgaatgtggacaatgctagaaagtcttaca-ttatgaaat 15

                         
Query: 158 ggaggaagtatatg 171
           ||||| ||||||||
Sbjct: 14  ggagggagtatatg 1




>RF00906;MIR1122;AAAA02032856.1/3493-3654 39946:Oryza sativa Indica
           Group
          Length = 162

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 94/112 (83%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||| | ||||||||| ||| |||| | || ||  |||||||||||||||||||| |
Sbjct: 48  cattcatttagatgttaatgaatatagacatatgtacgtgtttagattcattaacatcta 107

                                                               
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||| ||||| | |||| ||||| |  ||||| |||||||||||||||||||
Sbjct: 108 tatgtatgtgagcaatgctagaaagtcttaca-ttgtgaaacggaggaagta 158



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 125/155 (80%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||| ||||   ||||||||||  || ||| ||||| |||||||
Sbjct: 158 tacttcctccgtttcacaatgtaagactttctagcattgctcacatacatatagatgtta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||| | |  || |||||| || ||||||||||||| | |||||||| || ||| 
Sbjct: 98  atgaatctaaacacgtacatatgtctatattcattaacatctaaatgaatgtaggcaata 39

                                              
Query: 133 ttagaatgatttacatttgtgaaacggaggaagta 167
           ||| || |  ||||| |||| ||||||||||||||
Sbjct: 38  ttaaaaagtcttaca-ttgtaaaacggaggaagta 5




>RF00906;MIR1122;AACV01024080.1/281-400 39947:Oryza sativa
          Japonica Group
          Length = 120

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          ||||||||||| ||||||||| ||||| ||| ||| ||||||| ||||||||||||||| 
Sbjct: 4  ctactccctccgtttcacaatgtaagtcattatagtatttttcacattcatattgatgtc 63

              
Query: 72 aata 75
          ||||
Sbjct: 64 aata 67



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattga 67
           |||||||||||||||| ||| ||||| ||||||| ||||||| ||||||||||||
Sbjct: 116 tactccctccatttcataatgtaagtcattctagtatttttcacattcatattga 62



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 51/59 (86%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||||  ||||  || ||||| ||||| |||||||||||||| ||||
Sbjct: 62  acatcaatatgaatgtgaaaaatactataatgacttaca-ttgtgaaacggagggagta 5




>RF00906;MIR1122;AACV01016079.1/9825-9954 39947:Oryza sativa
           Japonica Group
          Length = 130

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                       
Query: 96  tttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaa 155
           |||||||||||||| |||||||||||| || |||||| |||||||| ||||| || ||||
Sbjct: 56  tttagattcattaatatcaatatgaatatgagaaatgctagaatgacttaca-ttatgaa 114

                       
Query: 156 acggaggaagta 167
           ||||||| ||||
Sbjct: 115 acggagggagta 126



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||| ||| ||||| |||||||||||| ||  |||||||||||| ||
Sbjct: 127 ctactccctccgtttcataatgtaagtcattctagcatttctcatattcatattgatatt 68

                     
Query: 72  aataaatcta 81
           ||| ||||||
Sbjct: 67  aatgaatcta 58



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatatt 65
          ||||| ||||| ||||||||||||||| ||||||||||||| | |||| |||||
Sbjct: 4  ctacttcctccgtttcacaatataagtcattctagcattttccacatttatatt 57



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 48/54 (88%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||| ||||||| ||||| |||||||| ||| ||| |||||||||||||||||
Sbjct: 57  aatataaatgtggaaaatgctagaatgacttatatt-gtgaaacggaggaagta 5




>RF00906;MIR1122;AP003824.3/55428-55285 39947:Oryza sativa Japonica
           Group
          Length = 144

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||| ||||   |||||||||| | | ||||||||| ||||||
Sbjct: 141 ctactccctccgtttcacaatgtaagactttctagcattgtccacattcatatagatgtt 82

                       
Query: 72  aataaatctaga 83
           ||||||||||||
Sbjct: 81  aataaatctaga 70



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 60/70 (85%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||| ||||||||| ||||||||||||  |||| ||||| |  ||||| |||||||||
Sbjct: 72  tagatttattaacatctatatgaatgtggacaatgctagaaagtcttaca-ttgtgaaac 130

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 131 ggagggagta 140




>RF00906;MIR1122;AACV01012859.1/32289-32424 39947:Oryza sativa
           Japonica Group
          Length = 136

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           |||||||||||||||| ||||| ||||||| |||| ||||||||||||||||
Sbjct: 64  tagattcattaacatctatatgcatgtgggcaatgctagaatgatttacatt 115




>RF00906;MIR1122;AACV01005561.1/19179-19268 39947:Oryza sativa
           Japonica Group
          Length = 90

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 84  tagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgtta 135
           ||||||||||||| |||||||||||||||  ||||||||||||| |||||||
Sbjct: 53  tagatatatatgtctagattcattaacatatatatgaatgtgggcaatgtta 2



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 84  tagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           |||| |||||| | |||||||||||||||  ||||||||||||| ||||
Sbjct: 38  tagacatatatatctagattcattaacatatatatgaatgtgggcaatg 86




>RF00906;MIR1122;AC037425.7/61774-61921 4530:Oryza sativa (rice)
          Length = 148

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||  ||||| ||| ||||| ||||||| ||||  | |||||||| ||||||||
Sbjct: 144 tactccctctgtttcataatgtaagtcattctagtatttcccacattcatagtgatgtta 85

                               
Query: 73  ataaatctagatagatatat 92
           ||||||||||||| ||||||
Sbjct: 84  ataaatctagatatatatat 65



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||| ||| ||||| ||||||||||||||| |||||||| ||||||||
Sbjct: 5  tacttcctccgtttcataatgtaagtcattctagcatttttcacattcatagtgatgtta 64

             
Query: 73 ata 75
          |||
Sbjct: 65 ata 67



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttac 146
           |||||||| | |||||| |||||||||| ||||||||||||||||  |||||||| ||||
Sbjct: 65  atatatatatctagatttattaacatcactatgaatgtgggaaatactagaatgacttac 124

              
Query: 147 att 149
           |||
Sbjct: 125 att 127




>RF00906;MIR1122;AAAA02003905.1/23139-23041 39946:Oryza sativa
           Indica Group
          Length = 99

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 49/52 (94%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                               
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 45  tatgaatgtgggaaatgctagaatgacttaca-ttgtgaaacggaggaagta 95



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                  
Query: 12 ctactccctccatttcacaatataagttattctagcattt 51
          ||||| ||||| ||||||||| ||||| ||||||||||||
Sbjct: 96 ctacttcctccgtttcacaatgtaagtcattctagcattt 57



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||||||||  ||||||||| ||||| ||||||||||||
Sbjct: 5  tactccctctgtttcacaatgtaagtcattctagcattt 43




>RF00906;MIR1122;AP002092.1/128789-128929 39947:Oryza sativa
           Japonica Group
          Length = 141

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||| ||||||||||| ||||||| |||||||||
Sbjct: 137 tacttcctccgtttcacaatataagtcattttagcatttttcacattcatgttgatgtta 78



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                      
Query: 16 tccctccatttcacaatataagttattctagcatttttcgcattcatattgatgttaata 75
          ||||||| ||||||||||||||| |||||||||||| ||  ||  |||||||| ||||| 
Sbjct: 8  tccctccgtttcacaatataagtcattctagcatttctcatatagatattgatattaatg 67

                
Query: 76 aatcta 81
          ||||||
Sbjct: 68 aatcta 73



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||| ||||||||  || || |||||| |||||||| ||| | |||||||||
Sbjct: 73  tagattcattaatatcaatatctatatgagaaatgctagaatgacttata-ttgtgaaac 15

                
Query: 158 ggagg 162
           |||||
Sbjct: 14  ggagg 10



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 53/61 (86%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                       
Query: 107 taacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagt 166
           ||||||||| |||||||||  ||||| || ||||| ||| ||| ||||||||||||||||
Sbjct: 78  taacatcaacatgaatgtgaaaaatgctaaaatgacttatatt-gtgaaacggaggaagt 136

            
Query: 167 a 167
           |
Sbjct: 137 a 137




>RF00906;MIR1122;AAAA02008121.1/20552-20439 39946:Oryza sativa
           Indica Group
          Length = 114

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 67/76 (88%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                       
Query: 92  tatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttg 151
           ||||| || ||| |||||||||||||||||||||| ||||  || ||||| ||||| |||
Sbjct: 79  tatgtataaatttattaacatcaatatgaatgtggaaaatactaaaatgacttaca-ttg 21

                           
Query: 152 tgaaacggaggaagta 167
           ||||||||||||||||
Sbjct: 20  tgaaacggaggaagta 5



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||| ||| ||||| | |||||||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattttagtattttccacattcatattgatgtta 64

                
Query: 73 ataaat 78
          ||||||
Sbjct: 65 ataaat 70




>RF00906;MIR1122;AACV01001224.1/5364-5468 39947:Oryza sativa
           Japonica Group
          Length = 105

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 58/64 (90%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                       
Query: 104 cattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagga 163
           ||||||||| ||||| |||||| |||||| |||||||| ||||||| |||||||||||||
Sbjct: 67  cattaacattaatataaatgtgagaaatgctagaatgacttacatt-gtgaaacggagga 9

               
Query: 164 agta 167
           ||||
Sbjct: 8   agta 5



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          ||||| ||||| ||||||||| ||||| |||||||||||| || |||| ||||| |||||
Sbjct: 4  ctacttcctccgtttcacaatgtaagtcattctagcatttctcacatttatattaatgtt 63

             
Query: 72 aat 74
          |||
Sbjct: 64 aat 66




>RF00906;MIR1122;AACV01021025.1/26769-26650 39947:Oryza sativa
           Japonica Group
          Length = 120

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                       
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtatat 170
           |||||||||||||||||||||| |||||||| ||| | |||||||||||||| |||||||
Sbjct: 60  atcaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaacggagggagtatat 2



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||||||||| ||||||||||||||| ||||||||||||  | |||||||||||||
Sbjct: 5  tactccctccgtttcacaatataagtcattctagcatttcccacattcatattgat 60



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Plus

                                                                    
Query: 112 tcaatatgaatgtgggaaatgttagaatgatttacatttgtg-aaacggaggaagta 167
           ||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||||||
Sbjct: 61  tcaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaaacggaggaagta 116



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 24  tttcacaatataagttattctagcatttttcgcattcatattga 67
           ||||||||||||||| ||||||||||||  | ||||||||||||
Sbjct: 104 tttcacaatataagtcattctagcatttcccacattcatattga 61




>RF00906;MIR1122;AP008216.1/5745760-5745877 39947:Oryza sativa
           Japonica Group
          Length = 118

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                   
Query: 112 tcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||
Sbjct: 60  tcaatatgaatgtgggaaatgctagaatgacttata-ttgtgaaacggaggaagta 114



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattga 67
           ||||||| ||||| ||||||||||||||| ||||||||||||  | ||||||||||||
Sbjct: 117 tactacttcctccgtttcacaatataagtcattctagcatttcccacattcatattga 60



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
          |||||||||| ||||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct: 5  tactccctccgtttcacaatataagtcattctagca-tttccacattcatattgat 59



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 54/60 (90%), Gaps = 2/60 (3%)
 Strand = Plus / Minus

                                                                       
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtatat 170
           |||||||||||||||| ||||| |||||||| ||| ||| |||||||||||| |||||||
Sbjct: 59  atcaatatgaatgtgg-aaatgctagaatgacttatatt-gtgaaacggagggagtatat 2




>RF00906;MIR1122;AAAA02025818.1/4289-4148 39946:Oryza sativa Indica
           Group
          Length = 142

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| |||||||| ||||||| ||| |||||||| |||||||||||||| |||||||
Sbjct: 62  tatatgtctagattcactaacatccatacgaatgtggaaaatgttagaatgacttacatt 121



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||| ||||||||||| ||||||||||||||| ||||| || ||||||||||| ||||
Sbjct: 62  acatccatatgaatgtgagaaatgttagaatgacttaca-ttatgaaacggagggagta 5




>RF00906;MIR1122;AY946768.1/117-30 4530:Oryza sativa (rice)
          Length = 88

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 76/90 (84%), Gaps = 6/90 (6%)
 Strand = Plus / Minus

                                                                       
Query: 43  ctagcatttttcgcattcatattgatgttaataaatctagatagatatatatgtttagat 102
           |||||||||  | ||||||||||||||| ||| |||||||| ||||      || |||||
Sbjct: 88  ctagcatttcccacattcatattgatgtcaatgaatctagacagat------gtctagat 35

                                         
Query: 103 tcattaacatcaatatgaatgtgggaaatg 132
           ||||| ||||||||||||||||||||||||
Sbjct: 34  tcattgacatcaatatgaatgtgggaaatg 5



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 98  tagattcattaacatcaatatgaatgtgggaaatg 132
           |||||||||| ||||||||||||||||||||||||
Sbjct: 50  tagattcattgacatcaatatgaatgtgggaaatg 84




>RF00906;MIR1122;AAAA02004640.1/4833-4692 39946:Oryza sativa
          Indica Group
          Length = 142

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                      
Query: 24 tttcacaatataagttattctagcatttttcgcattcatattgatgttaataaatctaga 83
          ||||| ||||||||| ||||||||||||| | |||||||| ||||| |||| ||||||||
Sbjct: 16 tttcataatataagtcattctagcattttccacattcatactgatgctaatgaatctaga 75

             
Query: 84 tag 86
          |||
Sbjct: 76 tag 78



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 65/74 (87%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||| ||||||||||| ||||| |||||||| ||| | || ||||||
Sbjct: 73  tagattcattagcatcagtatgaatgtggaaaatgctagaatgacttata-ttatgaaac 15

                         
Query: 158 ggaggaagtatatg 171
            |||||||||||||
Sbjct: 14  agaggaagtatatg 1



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                      
Query: 109 acatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||||||||||||||| || ||||| ||||| || ||||||||||| ||||
Sbjct: 81  acatcaatatgaatgtgggaaatgctacaatgacttaca-ttatgaaacggagggagta 138



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
           ||||||||||| ||||| ||| ||||| ||| ||||||||  | |||||||||||||||
Sbjct: 139 ctactccctccgtttcataatgtaagtcattgtagcatttcccacattcatattgatgt 81




>RF00906;MIR1122;AP004159.3/17803-17642 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 93/111 (83%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||||| ||||||||| ||| |||| |   |||||||| |||||||||||||||| ||
Sbjct: 49  attcatatagatgttaatgaatttagacacgcatatatgtctagattcattaacatctat 108

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||| |||| |||  ||||| |  ||||| |||||||||||||| ||||
Sbjct: 109 atgaatatgggcaatactagaaagtcttaca-ttgtgaaacggagggagta 158



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||||| ||||||||| |||||||| | ||||   ||| || ||||||||||||| ||
Sbjct: 114 attcatatagatgttaatgaatctagacatatatgcgtgtctaaattcattaacatctat 55

                      
Query: 117 atgaatgtggg 127
           |||||| ||||
Sbjct: 54  atgaatatggg 44




>RF00906;MIR1122;AC137608.2/32926-33041 39947:Oryza sativa Japonica
           Group
          Length = 116

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 61/67 (91%), Gaps = 2/67 (2%)
 Strand = Plus / Minus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           ||||||||||||||||||| |||| | ||||| |||||||| ||||| ||||||||||||
Sbjct: 69  attcattaacatcaatatggatgt-gaaaatgctagaatgacttaca-ttgtgaaacgga 12

                  
Query: 161 ggaagta 167
           |||||||
Sbjct: 11  ggaagta 5



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 55/62 (88%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||||||| ||||| ||||||||| ||||| ||| |||||||||||||
Sbjct: 5  tacttcctccgtttcacaatgtaagtcattctagca-ttttcacatccatattgatgtta 63

            
Query: 73 at 74
          ||
Sbjct: 64 at 65



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 17  ccctccatttcacaatataagttattctagcatttt 52
           |||||| ||||||||| ||||| |||||||||||||
Sbjct: 108 ccctccgtttcacaatgtaagtcattctagcatttt 73




>RF00906;MIR1122;AP000492.1/101668-101829 39947:Oryza sativa
           Japonica Group
          Length = 162

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||||||  ||||||||||||||||| | |||||| ||   ||||||||||||||  |
Sbjct: 48  cattcatatatatgttaataaatctagacatatatatgtgccaagattcattaacatata 107

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           |||||||||||| |||| |||||
Sbjct: 108 tatgaatgtgggcaatgctagaa 130



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||||||  |||||||| ||||| |  | |||||||||| |||||| ||||||||  |
Sbjct: 115 cattcatatatatgttaatgaatcttggcacatatatatgtctagatttattaacatata 56

                            
Query: 116 tatgaatgtgggaaatg 132
           |||||||||||| ||||
Sbjct: 55  tatgaatgtgggcaatg 39




>RF00906;MIR1122;AACV01003992.1/29908-29746 39947:Oryza sativa
           Japonica Group
          Length = 163

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 105/127 (82%), Gaps = 1/127 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| | ||||||   ||||||||||   | ||||||||| |||||||
Sbjct: 5   tactccctccgtttcatattataagactttctagcattacccacattcatatagatgtta 64

                                                                       
Query: 73  a-taaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaat 131
           | | |||||||| |  || |||| | |||||||||||||||| ||||||||||||| |||
Sbjct: 65  aattaatctagacacctacatatatctagattcattaacatctatatgaatgtgggcaat 124

                  
Query: 132 gttagaa 138
           | |||||
Sbjct: 125 gctagaa 131



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 105/127 (82%), Gaps = 1/127 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| | ||||||   ||||||||||   | ||||||||| |||||||
Sbjct: 159 tactccctccgtttcagattataagactttctagcattgcccacattcatatagatgtta 100

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcatt-aacatcaatatgaatgtgggaaat 131
           || |||||||||| || ||  ||| |||||| ||| |||||| ||||||||||||| |||
Sbjct: 99  atgaatctagatatatgtaggtgtctagattaatttaacatctatatgaatgtgggtaat 40

                  
Query: 132 gttagaa 138
           | |||||
Sbjct: 39  gctagaa 33




>RF00906;MIR1122;CR855182.1/16479-16369 4530:Oryza sativa (rice)
          Length = 111

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 110 catcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| |||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 61  catcaatatgaacgtgggaaatgctagaatgacttaca-ttgtgaaacggagggagta 5



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                      
Query: 10 tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
          ||||||||||||| ||||||||| ||||| ||||||||||||  | | ||||||||||||
Sbjct: 2  tactactccctccgtttcacaatgtaagtcattctagcatttcccacgttcatattgatg 61



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 122 tgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||| |||||||||||||| |||| ||||||||| ||||
Sbjct: 63  tgtgggaaatgctagaatgatttaca-ttgtaaaacggagggagta 107




>RF00906;MIR1122;AL662961.3/56991-57130 39947:Oryza sativa Japonica
           Group
          Length = 140

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| ||||||||||||| ||||||||  |||||||| ||||| || ||||||
Sbjct: 68  tagattcattagcatcaatatgaatatgggaaatactagaatgacttaca-ttatgaaac 126

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 127 ggagggagta 136



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                      
Query: 10 tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
          ||||||| ||||| ||||||||| ||||| ||||||| |||| ||  |||||||||||||
Sbjct: 2  tactacttcctccgtttcacaatgtaagtaattctagtatttctcatattcatattgatg 61



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||| ||| ||||| ||||||| ||||  |  ||||||||||||| |
Sbjct: 137 ctactccctccgtttcataatgtaagtcattctagtatttcccatattcatattgatgct 78

                       
Query: 72  aataaatctaga 83
           ||| ||||||||
Sbjct: 77  aatgaatctaga 66



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 110 catcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||| || |||||  |||||| | ||||||| |||||||||||||||||
Sbjct: 61  catcaatatgaatatgagaaatactagaattacttacatt-gtgaaacggaggaagta 5




>RF00906;MIR1122;AAAA02003671.1/11725-11603 39946:Oryza sativa
           Indica Group
          Length = 123

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||| |||||||| ||| | |||||||||||||||||||
Sbjct: 67  aatatgaatgtgggaaatgctagaatgacttata-ttgtgaaacggaggaagta 119



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatatt 65
           |||| ||||| ||||||||||||||| ||||||||||||  | ||||||||||
Sbjct: 119 tacttcctccgtttcacaatataagtcattctagcatttcccacattcatatt 67



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 110 catcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           ||||||||||||| ||||||||| |||||||| ||| | ||||||||||||
Sbjct: 61  catcaatatgaatatgggaaatgctagaatgacttata-ttgtgaaacgga 12



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                        
Query: 24 tttcacaatataagttattctagcatttttcgcattcatattgatg 69
          ||||||||||||||| ||||||||||||  |  |||||||||||||
Sbjct: 16 tttcacaatataagtcattctagcatttcccatattcatattgatg 61




>RF00906;MIR1122;AP008210.1/22180576-22180487 39947:Oryza sativa
           Japonica Group
          Length = 90

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 45  gattcattagcatcaatatgaatgtgggaaatgctagaatga 4



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 100 gattcattaacatcaatatgaatgtgggaaatgttagaatga 141
           ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 46  gattcattagcatcaatatgaatgtgggaaatgctagaatga 87




>RF00906;MIR1122;AACV01004004.1/73579-73692 39947:Oryza sativa
           Japonica Group
          Length = 114

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                       
Query: 41  ttctagcatttttcgcattcatattgatgttaataaatctagatagatatatatgtttag 100
           |||||||||| | | |||||||||  |||||||| |||||||| |  ||| | ||  |||
Sbjct: 9   ttctagcattgtccacattcatatatatgttaatgaatctagacatgtatgtgtgcctag 68

                                                 
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaa 138
           ||||||||||||| ||||||||||||| |||| |||||
Sbjct: 69  attcattaacatctatatgaatgtgggcaatgctagaa 106



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||  | | ||| |||| |||||||||||||||  |
Sbjct: 91  cattcatatagatgttaatgaatctaggcacacatacatgtctagattcattaacatata 32

                      
Query: 116 tatgaatgtgg 126
           |||||||||||
Sbjct: 31  tatgaatgtgg 21




>RF00906;MIR1122;AAAA02024119.1/11927-11764 39946:Oryza sativa
           Indica Group
          Length = 164

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 73/85 (85%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgttta--gattcattaacatc 113
           ||||||||| ||||||||| |||||| ||| |||| | ||| ||  ||||||||||||||
Sbjct: 48  cattcatatagatgttaatgaatctatatatatatgtgtgtgtatagattcattaacatc 107

                                    
Query: 114 aatatgaatgtgggaaatgttagaa 138
            ||||||||||||| |||| |||||
Sbjct: 108 tatatgaatgtgggcaatgctagaa 132



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 105/128 (82%), Gaps = 2/128 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| | ||||||   ||||||||||   | ||||||||| |||||||
Sbjct: 160 tactccctccgtttcatattataagactttctagcattgcccacattcatatagatgtta 101

                                                                       
Query: 73  ataaatctagatagata--tatatgtttagattcattaacatcaatatgaatgtgggaaa 130
           || |||||| | | | |  ||||| | |||||||||||||||| ||||||||||||| ||
Sbjct: 100 atgaatctatacacacacatatatatatagattcattaacatctatatgaatgtgggcaa 41

                   
Query: 131 tgttagaa 138
           || |||||
Sbjct: 40  tgctagaa 33




>RF00906;MIR1122;AL663019.2/55100-55213 39947:Oryza sativa Japonica
           Group
          Length = 114

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           ||||||||  |||||||| |||||||  | | |||||||  |||||||||||||||| ||
Sbjct: 25  attcatatatatgttaatgaatctaggcatacatatatgcctagattcattaacatctat 84

                                 
Query: 117 atgaatgtgggaaatgttagaa 138
           ||||||||||| |||| |||||
Sbjct: 85  atgaatgtgggcaatgctagaa 106



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||||||| |||||||  | |||| ||||  |||||||||||||||  |
Sbjct: 91  cattcatatagatgttaatgaatctaggcatatatgtatgcctagattcattaacatata 32

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           ||||||| |||| |||| |||||
Sbjct: 31  tatgaatatgggcaatgctagaa 9




>RF00906;MIR1122;AAAA02023450.1/14767-14902 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 94  tgtttagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct: 60  tgtttagattcattaacatctatatgaatgtgggcaatgctagaa 104




>RF00906;MIR1122;AAAA02031701.1/6482-6608 39946:Oryza sativa Indica
           Group
          Length = 127

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 103 tcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagg 162
           |||||||||||||||||||||||| || || || ||||| ||||| || |||||||||||
Sbjct: 68  tcattaacatcaatatgaatgtggaaagtgctaaaatgacttaca-ttatgaaacggagg 10

                
Query: 163 aagta 167
           |||||
Sbjct: 9   aagta 5



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 51/57 (89%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 111 atcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||| || |||||||| ||||| ||||||||| |||| ||||
Sbjct: 68  atcaatatgaatgtgggaagtgctagaatgacttaca-ttgtgaaacagagggagta 123



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||| ||||| ||||| ||| ||||| ||| ||||| ||| | |||||||||||||||||
Sbjct: 5  tacttcctccgtttcataatgtaagtcattttagcactttccacattcatattgatgtta 64

            
Query: 73 at 74
          ||
Sbjct: 65 at 66



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgat 68
           ||||||||||  ||||||||| ||||| ||||||||| ||  | |||||||||||||
Sbjct: 124 ctactccctctgtttcacaatgtaagtcattctagcacttcccacattcatattgat 68




>RF00906;MIR1122;AAAA02033484.1/80878-80987 39946:Oryza sativa
           Indica Group
          Length = 110

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||||||||||||| ||| | ||| |||||||||||  ||| ||||||||  ||
Sbjct: 106 tactccctccatttcacaatgtaaatcattttagcatttttcatatttatattgatacta 47

                        
Query: 73  ataaatctagata 85
           || ||||||||||
Sbjct: 46  atgaatctagata 34



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 59/70 (84%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||  |||||||| ||| ||  ||||| || ||||||||||| |||||||| 
Sbjct: 38  tagattcattagtatcaatataaatatgaaaaatgctaaaatgatttaca-ttgtgaaat 96

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 97  ggagggagta 106




>RF00906;MIR1122;AAAA02001474.1/15209-15351 39946:Oryza sativa
           Indica Group
          Length = 143

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 71/81 (87%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           ||||||||||||||| ||||||| | |||||||| || |||| ||||| |  ||||| ||
Sbjct: 65  atatgtttagattcaataacatctaaatgaatgt-ggcaatgctagaaagtcttaca-tt 122

                                
Query: 151 gtgaaacggaggaagtatatg 171
           |||||||||||||||||||||
Sbjct: 123 gtgaaacggaggaagtatatg 143



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 149 ttgtgaaacggaggaagtatatg 171
           |||||||||||||||||||||||
Sbjct: 23  ttgtgaaacggaggaagtatatg 1




>RF00906;MIR1122;AC145367.2/80971-81106 39947:Oryza sativa Japonica
           Group
          Length = 136

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 94  tgtttagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct: 60  tgtttagattcattaacatctatatgaatgtgggcaatgctagaa 104




>RF00906;MIR1122;AP005473.4/59321-59460 39947:Oryza sativa Japonica
           Group
          Length = 140

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           ||||||||||||||||||||||| ||||| ||||||| |||| ||||| |  ||| | ||
Sbjct: 61  atatgtttagattcattaacatctatatgtatgtgggtaatgctagaaagtcttata-tt 119

                            
Query: 151 gtgaaacggaggaagta 167
           |||||||||||| ||||
Sbjct: 120 gtgaaacggagggagta 136



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
           ||||||||||| ||||||||||||||   ||||||||||   | ||| ||||| ||||||
Sbjct: 137 ctactccctccgtttcacaatataagactttctagcattacccacatacatatagatgtt 78

                     
Query: 72  aataaatcta 81
           ||| ||||||
Sbjct: 77  aatgaatcta 68




>RF00906;MIR1122;AP008213.1/2356452-2356313 39947:Oryza sativa
           Japonica Group
          Length = 140

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           ||||||||||||||||||||||| ||||| ||||||| |||| ||||| |  ||| | ||
Sbjct: 80  atatgtttagattcattaacatctatatgtatgtgggtaatgctagaaagtcttata-tt 22

                            
Query: 151 gtgaaacggaggaagta 167
           |||||||||||| ||||
Sbjct: 21  gtgaaacggagggagta 5



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtt 71
          ||||||||||| ||||||||||||||   ||||||||||   | ||| ||||| ||||||
Sbjct: 4  ctactccctccgtttcacaatataagactttctagcattacccacatacatatagatgtt 63

                    
Query: 72 aataaatcta 81
          ||| ||||||
Sbjct: 64 aatgaatcta 73




>RF00906;MIR1122;ABRL01001491.1/12562-12416 65489:Oryza barthii
          Length = 147

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                   
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
          |||||||||| ||||||||| ||||| ||||||| |||| || ||||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagtatttctcacattcatattgatg 61



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 110 catcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||||||||||||||| |||||  |||||||| ||||| |||||||||||||| |||||
Sbjct: 61  catcaatatgaatgtgagaaatactagaatgacttaca-ttgtgaaacggagggagtat 4




>RF00906;MIR1122;AC134931.2/49884-50026 39947:Oryza sativa Japonica
           Group
          Length = 143

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           |||||||||||||||| ||||||||| ||||||||||||| |  ||| |||||||||
Sbjct: 139 tactccctccatttcataatataagtcattctagcattttccatatttatattgatg 83




>RF00906;MIR1122;AAAA02028024.1/19895-19754 39946:Oryza sativa
           Indica Group
          Length = 142

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||||||||| ||||||||||| |||| ||||||||||||| |||| |||||
Sbjct: 59  atatatatgtctagattcattagcatctatatgaatgtgggcaatgatagaa 110




>RF00906;MIR1122;AAAA02006407.1/37604-37445 39946:Oryza sativa
           Indica Group
          Length = 160

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Plus

                                                                       
Query: 57  attcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaat 116
           |||||||||||||||||| ||||||| ||  |||   ||| |||||||||||||||  ||
Sbjct: 49  attcatattgatgttaatgaatctaggta--tatgcgtgtctagattcattaacatttat 106

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||  |||| ||||| |  ||||| || ||||||||||||||||
Sbjct: 107 atgaatgtggacaatgctagaaagtcttaca-ttatgaaacggaggaagta 156



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 127/158 (80%), Gaps = 3/158 (1%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||| ||| ||||   |||||||||| | | |||||||||  |||
Sbjct: 159 tactacttcctccgtttcataatgtaagactttctagcattgtccacattcatataaatg 100

                                                                       
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaa 129
           ||||| |||||||| |   |||||  |  |||||||||||||||||||||||| | || |
Sbjct: 99  ttaatgaatctagacacgcatatacct--agattcattaacatcaatatgaatataggca 42

                                                 
Query: 130 atgttagaatgatttacatttgtgaaacggaggaagta 167
           ||| ||||| |  ||||| || ||||||||||| ||||
Sbjct: 41  atgctagaaagtcttaca-ttatgaaacggagggagta 5




>RF00906;MIR1122;AAAA02025638.1/15493-15356 39946:Oryza sativa
           Indica Group
          Length = 138

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||||| |||||||||||||||||||| ||||  ||||||| ||||||||||
Sbjct: 55  atatatgtgtttagattcattaacatctatatatatgtgggcaatgttagaa 106




>RF00906;MIR1122;AACV01027096.1/420-516 39947:Oryza sativa Japonica
           Group
          Length = 97

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 103 tcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggagg 162
           ||||| |||||||||| |||||| |||||| |||||||| ||| ||| || |||||||||
Sbjct: 30  tcatttacatcaatataaatgtgagaaatgctagaatgacttatatt-gtaaaacggagg 88

                   
Query: 163 aagtatat 170
           ||||||||
Sbjct: 89  aagtatat 96



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                    
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgt 70
          |||| ||||| ||| ||||||||||| |||||||||||| || |||| ||||||||||
Sbjct: 93 tacttcctccgttttacaatataagtcattctagcatttctcacatttatattgatgt 36




>RF00906;MIR1122;ABRL01002327.1/13187-13322 65489:Oryza barthii
          Length = 136

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||||||||| |||||||||||||||  ||||||||||||| |||| |||||
Sbjct: 53  atatatatgtctagattcattaacatatatatgaatgtgggtaatgctagaa 104




>RF00906;MIR1122;AACV01009998.1/1442-1290 39947:Oryza sativa
           Japonica Group
          Length = 153

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtatat 170
           |||| ||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 56  atataaatgtgggaaatgctagaatgacttaca-ttgtgaaacggagggagtatat 2



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                            
Query: 120 aatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||||||||||| |||||||| ||||| |||||||||||||| |||||
Sbjct: 103 aatgtgggaaatgctagaatgacttaca-ttgtgaaacggagggagtat 150



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattt 43



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 13  tactccctccatttcacaatataagttattctagcattt 51
           |||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 149 tactccctccgtttcacaatgtaagtcattctagcattt 111



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 115 atatgaatgtgggaaatgttagaatgatttacatttgtgaaacgg 159
           |||| ||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 55  atataaatgtgggaaatgctagaatgacttaca-ttgtgaaacgg 98




>RF00906;MIR1122;AAAA02029423.1/117947-118080 39946:Oryza sativa
          Indica Group
          Length = 134

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                      
Query: 24 tttcacaatataagttattctagcatttttcgcattcatattgatgttaataaatctaga 83
          ||||||||||||||| ||| |||||||||||  ||| | ||| |||||||| ||||||||
Sbjct: 16 tttcacaatataagtcattttagcatttttcatatttacattaatgttaatgaatctaga 75

                 
Query: 84 tagatat 90
           ||||||
Sbjct: 76 cagatat 82



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 17  ccctccatttcacaatataagttattctagcatttttcgcattcatat 64
           |||||| ||||||||||||||| ||| || |||||||| |||||||||
Sbjct: 126 ccctccgtttcacaatataagtcattttaacatttttcacattcatat 79



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 68/82 (82%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 89  atatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacat 148
           |||| ||| ||||||||||||||| ||| | ||| ||  ||||| || ||||| ||| ||
Sbjct: 82  atatctgtctagattcattaacattaatgtaaatatgaaaaatgctaaaatgacttatat 23

                                 
Query: 149 ttgtgaaacggaggaagtatat 170
           | |||||||||| |||||||||
Sbjct: 22  t-gtgaaacggaagaagtatat 2




>RF00906;MIR1122;AAAA02021983.1/2035-1916 39946:Oryza sativa Indica
           Group
          Length = 120

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           |||||||||  ||| |||| |||||||  | | |||||||| ||||||||||  |||| |
Sbjct: 27  cattcatatctatgctaatgaatctaggcacacatatatgtctagattcatttgcatcta 86

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           |||||||||||| ||||||||||
Sbjct: 87  tatgaatgtgggcaatgttagaa 109



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgtttagattcattaacatcaa 115
           ||||||||| ||||  ||| |||||||| | |||| | ||  ||||||||||| |||  |
Sbjct: 94  cattcatatagatgcaaatgaatctagacatatatgtgtgcctagattcattagcataga 35

                                  
Query: 116 tatgaatgtgggaaatgttagaa 138
           |||||||||||| |||| |||||
Sbjct: 34  tatgaatgtgggcaatgctagaa 12




>RF00906;MIR1122;AAAA02025148.1/1003-861 39946:Oryza sativa Indica
           Group
          Length = 143

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||||||||||||| ||||||| |||| || ||| |||||   ||
Sbjct: 142 tactacttcctccgtttcacaatataagtcattctaggatttctctcatccatataattg 83

                         
Query: 70  ttaataaatctaga 83
           ||||| ||||||||
Sbjct: 82  ttaatgaatctaga 69



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 116 tatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||||||||| ||||  |||||||| ||||||| ||||||||||||||||||
Sbjct: 55  tatgaatgtggaaaatactagaatgacttacatt-gtgaaacggaggaagtat 4



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 66/78 (84%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 90  tatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatt 149
           ||||||| ||||||||||||||   ||||| ||| | |||||  |||||||| ||| |||
Sbjct: 63  tatatgtctagattcattaacaattatatggatgagagaaatcctagaatgacttatatt 122

                             
Query: 150 tgtgaaacggaggaagta 167
            |||||||||||||||||
Sbjct: 123 -gtgaaacggaggaagta 139




>RF00906;MIR1122;AAAA02033815.1/24477-24365 39946:Oryza sativa
           Indica Group
          Length = 113

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||  || ||||| ||||| |||||||||||||||||||
Sbjct: 57  aatatgaatgtgggaaatactaaaatgacttaca-ttgtgaaacggaggaagta 109




>RF00906;MIR1122;AP003372.2/86541-86400 39947:Oryza sativa Japonica
           Group
          Length = 142

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 84  tagatatatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatt 143
           ||||| |||||||||||||||||||||||| || |  ||||||| |||| |||||    |
Sbjct: 87  tagatgtatatgtttagattcattaacatctatgtatatgtgggcaatgctagaaaatct 28

                                     
Query: 144 tacatttgtgaaacggaggaagtata 169
           |||| |||||||||||||| ||||||
Sbjct: 27  taca-ttgtgaaacggagggagtata 3




>RF00906;MIR1122;AAAA02015957.1/30234-30331 39946:Oryza sativa
           Indica Group
          Length = 98

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 121 atgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtatat 170
           |||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 50  atgtgggaaatgctagaatgacttaca-ttgtggaacggaggaagtatat 2




>RF00906;MIR1122;AACV01016547.1/15069-15198 39947:Oryza sativa
           Japonica Group
          Length = 130

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 93  atgtttagattcattaacatcaatatgaatgtgggaaatgttagaa 138
           |||| |||||||||||||||| ||||||||||||| |||| |||||
Sbjct: 53  atgtctagattcattaacatctatatgaatgtgggcaatgctagaa 98




>RF00906;MIR1122;AACV01014958.1/7523-7680 39947:Oryza sativa
           Japonica Group
          Length = 158

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 67/78 (85%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                       
Query: 91  atatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacattt 150
           |||||| |||||||||||||||| | ||||||||||| || | || || |  ||||| ||
Sbjct: 80  atatgtctagattcattaacatctaaatgaatgtgggcaacgctacaaagtcttaca-tt 22

                             
Query: 151 gtgaaacggaggaagtat 168
           ||||||||||||||||||
Sbjct: 21  gtgaaacggaggaagtat 4




>RF00906;MIR1122;AAAA02022635.1/21983-21840 39946:Oryza sativa
           Indica Group
          Length = 144

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 61/70 (87%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||||||||||| ||||||||||||| |||| ||||| |  ||||| || ||||||
Sbjct: 72  tagattcattaacatctatatgaatgtgggcaatgctagaaagtcttaca-ttatgaaac 130

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 131 ggagggagta 140




>RF00906;MIR1122;AACV01006898.1/39166-39311 39947:Oryza sativa
           Japonica Group
          Length = 146

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 60/69 (86%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           ||||||||||||| ||||||||||||| |||| || || | |||||| || |||||||||
Sbjct: 77  attcattaacatctatatgaatgtgggcaatgctaaaaagttttaca-ttatgaaacgga 135

                    
Query: 161 ggaagtata 169
           || ||||||
Sbjct: 136 gggagtata 144




>RF00906;MIR1122;AACV01006750.1/48875-49000 39947:Oryza sativa
          Japonica Group
          Length = 126

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||||||| ||||| ||| |||||||| ||  ||| ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattttagcatttctcatatttatattgatgtta 64

           
Query: 73 a 73
          |
Sbjct: 65 a 65



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 57/65 (87%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 106 ttaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaag 165
           ||||||||||||| ||| || |||||| || ||||| ||| ||| |||||||||||||||
Sbjct: 62  ttaacatcaatataaatatgagaaatgctaaaatgacttatatt-gtgaaacggaggaag 120

                
Query: 166 tatat 170
           |||||
Sbjct: 121 tatat 125



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||| ||||| ||||||||||||||| ||| |||||||| ||  ||| ||||||||||||
Sbjct: 122 tacttcctccgtttcacaatataagtcattttagcatttctcatatttatattgatgtta 63

            
Query: 73  a 73
           |
Sbjct: 62  a 62



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 ttaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaag 165
           ||||||||||||| ||| || |||||| || ||||| ||||| |||||||||||||| ||
Sbjct: 65  ttaacatcaatataaatatgagaaatgctaaaatgacttaca-ttgtgaaacggagggag 7

             
Query: 166 ta 167
           ||
Sbjct: 6   ta 5




>RF00906;MIR1122;AC120529.3/33430-33575 39947:Oryza sativa Japonica
           Group
          Length = 146

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 60/69 (86%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                       
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacgga 160
           ||||||||||||| ||||||||||||| |||| ||||| |  ||||| || |||||||||
Sbjct: 70  attcattaacatctatatgaatgtgggcaatgctagaaagtcttaca-ttatgaaacgga 12

                    
Query: 161 ggaagtata 169
           || ||||||
Sbjct: 11  gggagtata 3




>RF00906;MIR1122;AACV01014389.1/11060-11177 39947:Oryza sativa
           Japonica Group
          Length = 118

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 101 attcattaacatcaatatgaatgtgggaaatgttagaatga 141
           |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 49  attcattagcatcaatatgaatgtgggaaatgctaaaatga 89



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||| |||||| |||||||| ||||||| |||||||||||| ||||
Sbjct: 54  atgaatgtgagaaatgctagaatgagttacatt-gtgaaacggagggagta 5



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                            
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcat 62
          |||||||||| ||||||||| ||| | |||||||||||| || |||||||
Sbjct: 5  tactccctccgtttcacaatgtaactcattctagcatttctcacattcat 54




>RF00906;MIR1122;AAAA02018733.1/10980-10861 39946:Oryza sativa
           Indica Group
          Length = 120

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttt 52
           |||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 116 tactccctccgtttcacaatgtaagtcattctagcatttt 77



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                     
Query: 10 tactactccctccatttcacaatataagttattctagcatttt 52
          ||||||||||||| |||||||||  |||| |||||||||||||
Sbjct: 2  tactactccctccgtttcacaatgcaagtcattctagcatttt 44



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 43/48 (89%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                           
Query: 120 aatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||| ||||| |||||||| ||||||| |||||||||||| ||||
Sbjct: 70  aatgtggaaaatgctagaatgacttacatt-gtgaaacggagggagta 116




>RF00906;MIR1122;AAAA02022087.1/9518-9625 39946:Oryza sativa Indica
           Group
          Length = 108

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 112 tcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||| || |||||||||| |||||||| ||||||| |||||||||||| ||||
Sbjct: 59  tcaatataaacgtgggaaatgctagaatgacttacatt-gtgaaacggagggagta 5



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattt 43



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 11  actactccctccatttcacaatataagttattctagcatt 50
           |||||| | ||| ||||||||||||||| |||||||||||
Sbjct: 106 actacttcttccgtttcacaatataagtcattctagcatt 67




>RF00906;MIR1122;AAAA02036283.1/12137-12272 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 87  atatatatgtttagattcattaacatcaatatgaatgtgg 126
           ||||| |||| |||||||||||||||| ||||||||||||
Sbjct: 53  atatagatgtctagattcattaacatctatatgaatgtgg 92




>RF00906;MIR1122;AL928776.4/138726-138875 4530:Oryza sativa (rice)
          Length = 150

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 13 tactccctccatttcacaatataagttattctagcatttt 52
          |||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 5  tactccctccgtttcataatataagtcattctagcatttt 44




>RF00906;MIR1122;AAAA02004489.1/7901-7999 39946:Oryza sativa Indica
           Group
          Length = 99

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                          
Query: 121 atgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 50  atgtgggaaatgctagaatgacttaca-ttgtgaaacggagggagta 5



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 13 tactccctccatttcacaatataagttattctagcattt 51
          |||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 5  tactccctccgtttcacaatgtaagtcattctagcattt 43



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                   
Query: 129 aatgttagaatgatttacatttgtgaaacggaggaagtat 168
           |||| |||||||||||||| |||||||||||||| |||||
Sbjct: 58  aatgctagaatgatttaca-ttgtgaaacggagggagtat 96



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                
Query: 13 tactccctccatttcacaatataagttattctagcatt 50
          |||||||||| ||||||||| ||| | |||||||||||
Sbjct: 95 tactccctccgtttcacaatgtaaatcattctagcatt 58




>RF00906;MIR1122;AP003246.3/24505-24634 39947:Oryza sativa Japonica
           Group
          Length = 130

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 67/79 (84%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 92  tatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttg 151
           ||||| || ||||||||  ||| ||||||||||||| |||| ||||| |  ||||| |||
Sbjct: 52  tatgtctaaattcattagtatccatatgaatgtgggcaatgctagaaagtcttaca-ttg 110

                              
Query: 152 tgaaacggaggaagtatat 170
           ||||||||| |||||||||
Sbjct: 111 tgaaacggatgaagtatat 129




>RF00906;MIR1122;AP008213.1/18080772-18080661 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                          
Query: 122 tgtgggaaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||| ||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 64  tgtggaaaatgctagaatgacttacatt-gtgaaacggaggaagtat 109



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 13  tactccctccatttcacaatataagttattctagcatttt 52
           |||| ||||| ||||||||| ||||| |||||||||||||
Sbjct: 108 tacttcctccgtttcacaatgtaagtcattctagcatttt 69



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 117 atgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||| |||||||| || ||||| ||||||| |||||||||||| ||||
Sbjct: 54  atgaatgcgggaaatgctaaaatgacttacatt-gtgaaacggagggagta 5




>RF00906;MIR1122;AP008214.1/27990633-27990493 39947:Oryza sativa
          Japonica Group
          Length = 141

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                      
Query: 13 tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
          |||||||||| ||||| | ||||||   |||||||||| | | |||||| || |||||||
Sbjct: 5  tactccctccgtttcatattataagactttctagcattgtccacattcacatagatgtta 64

                     
Query: 73 ataaatctaga 83
          |||||||||||
Sbjct: 65 ataaatctaga 75




>RF00906;MIR1122;AAAA02036761.1/3716-3577 39946:Oryza sativa Indica
           Group
          Length = 140

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 67/79 (84%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                       
Query: 89  atatatgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacat 148
           ||||| || |||||||||||| ||| ||||| || |||| ||| ||||||||| ||||| 
Sbjct: 82  atataagtctagattcattaatatctatatgcatatgggcaatattagaatgacttaca- 24

                              
Query: 149 ttgtgaaacggaggaagta 167
           || ||||||||||| ||||
Sbjct: 23  ttatgaaacggagggagta 5




>RF00906;MIR1122;AL663005.3/79671-79830 39947:Oryza sativa Japonica
           Group
          Length = 160

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 88/107 (82%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 61  atattgatgttaataaatctagatagatatatatgtttagattcattaacatcaatatga 120
           |||| ||||||||| |||||||| | ||| |||| | |||||||||||| ||| | || |
Sbjct: 51  atatagatgttaatgaatctagaaacatacatatatctagattcattaatatctaaataa 110

                                                          
Query: 121 atgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||  |||| || || |  ||||| |||||||||||||||||||
Sbjct: 111 atgtggacaatgctaaaaagtcttaca-ttgtgaaacggaggaagta 156



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 88/109 (80%)
 Strand = Plus / Minus

                                                                       
Query: 10  tactactccctccatttcacaatataagttattctagcatttttcgcattcatattgatg 69
           ||||||| ||||| ||||||||| ||||   || ||||||| | | |||| || | ||| 
Sbjct: 159 tactacttcctccgtttcacaatgtaagactttttagcattgtccacatttatttagata 100

                                                            
Query: 70  ttaataaatctagatagatatatatgtttagattcattaacatcaatat 118
           ||||| |||||||||| || ||| | | |||||||||||||||| ||||
Sbjct: 99  ttaatgaatctagatatatgtatgtttctagattcattaacatctatat 51




>RF00906;MIR1122;AP003023.2/81435-81277 39947:Oryza sativa Japonica
           Group
          Length = 159

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 63/74 (85%), Gaps = 2/74 (2%)
 Strand = Plus / Minus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgttta--gattcattaacatc 113
           ||||||||| ||||||||| |||||| | | | |||| ||| ||  ||||||||||||||
Sbjct: 117 cattcatatagatgttaatgaatctatacacacatatgtgtgtatagattcattaacatc 58

                         
Query: 114 aatatgaatgtggg 127
            |||||||||||||
Sbjct: 57  tatatgaatgtggg 44



 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 63/74 (85%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                       
Query: 56  cattcatattgatgttaataaatctagatagatatatatgttta--gattcattaacatc 113
           ||||||||| ||||||||| |||||| | | | |||| ||| ||  ||||||||||||||
Sbjct: 48  cattcatatagatgttaatgaatctatacacacatatgtgtgtatagattcattaacatc 107

                         
Query: 114 aatatgaatgtggg 127
            |||||||||||||
Sbjct: 108 tatatgaatgtggg 121




>RF00906;MIR1122;AAAA02029293.1/9001-8890 39946:Oryza sativa Indica
           Group
          Length = 112

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 57/66 (86%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 105 attaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaa 164
           ||||| |||||||| ||||||  ||||  |||||||| || |||| ||||||||||||||
Sbjct: 47  attaatatcaatataaatgtgaaaaatactagaatgacttgcatt-gtgaaacggaggaa 105

                 
Query: 165 gtatat 170
           ||||||
Sbjct: 106 gtatat 111




>RF00906;MIR1122;AAAA02033622.1/8442-8581 39946:Oryza sativa Indica
           Group
          Length = 140

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 48/54 (88%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           ||||||||||||||||||  || ||| | ||||||| |||||||||||||||||
Sbjct: 88  aatatgaatgtgggaaattctacaataacttacatt-gtgaaacggaggaagta 140



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 114 aatatgaatgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| |||||  || ||| | ||||||| |||||||||||||||||
Sbjct: 57  aatatgaatgtgagaaattatacaataacttacatt-gtgaaacggaggaagta 5




>RF00906;MIR1122;AAAA02005618.1/85725-85886 39946:Oryza sativa
           Indica Group
          Length = 162

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 126/158 (79%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccctccatttcacaatataagttattctagcatttttcgcattcatattgatgtta 72
           |||||||||| ||||| ||| ||||   ||||||||||   | |||||||||  ||| ||
Sbjct: 158 tactccctccgtttcataatgtaagactttctagcattgcccacattcatatatatgcta 99

                                                                       
Query: 73  ataaatctagatagatatatatgtttagattcattaacatcaatatgaatgtgggaaatg 132
           || |||||||  | | |||||||| |||||||||||  ||| |||| |||||||| || |
Sbjct: 98  atgaatctaggcacacatatatgtctagattcattagtatctatataaatgtgggcaacg 39

                                                 
Query: 133 ttagaatgatttacatttgtgaaacggaggaagtatat 170
            ||||| |  ||||| || |||||| ||||||||||||
Sbjct: 38  ctagaaagtcttaca-ttatgaaacagaggaagtatat 2



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 59/70 (84%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           ||||||||||| |||  ||||||||||||| |||| ||||| |  ||||| || ||||||
Sbjct: 90  tagattcattagcatatatatgaatgtgggcaatgctagaaagtcttaca-ttatgaaac 148

                     
Query: 158 ggaggaagta 167
           ||||| ||||
Sbjct: 149 ggagggagta 158




>RF00906;MIR1122;AP008213.1/22940331-22940471 39947:Oryza sativa
           Japonica Group
          Length = 141

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 63/74 (85%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                       
Query: 94  tgtttagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtg 153
           |||||| ||||||||||||| ||||| || || | |||| || ||||  ||||||| |||
Sbjct: 65  tgtttaaattcattaacatctatatgtatatgagcaatgctaaaatgtcttacatt-gtg 123

                         
Query: 154 aaacggaggaagta 167
           ||||||||||||||
Sbjct: 124 aaacggaggaagta 137




>RF00906;MIR1122;AACV01005382.1/6871-7002 39947:Oryza sativa
           Japonica Group
          Length = 132

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 10  tactactccctccatttcacaatataagttattctagcattt 51
           ||||||||||||| ||||| ||| ||||| ||||||||||||
Sbjct: 131 tactactccctccgtttcataatgtaagtcattctagcattt 90



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                          
Query: 121 atgtgggaaatgttagaatgatttacatttgtgaaacggaggaagta 167
           |||||||||||| |||||||| ||||| || ||||||||||| ||||
Sbjct: 83  atgtgggaaatgctagaatgacttaca-ttatgaaacggagggagta 128



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 59/70 (84%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tagattcattaacatcaatatgaatgtgggaaatgttagaatgatttacatttgtgaaac 157
           |||||||| |||  || |||| |||||| ||||||||||||||| ||| | || ||||||
Sbjct: 73  tagattcactaatttccatataaatgtgagaaatgttagaatgacttata-ttatgaaac 15

                     
Query: 158 ggaggaagta 167
           | ||||||||
Sbjct: 14  gaaggaagta 5




>RF00906;MIR1122;AP006757.2/120962-120855 39947:Oryza sativa
          Japonica Group
          Length = 108

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 13 tactccctccatttcacaatataagttattctagcatttttc 54
          |||||||| | ||||||||||||||| ||||||| |||||||
Sbjct: 5  tactcccttcgtttcacaatataagtcattctagtatttttc 46



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 13  tactccctccatttcacaatataagttattctagcatttttc 54
           |||||||||| ||||||||| ||| | |||||||||||||||
Sbjct: 104 tactccctccgtttcacaatgtaaatcattctagcatttttc 63



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                    
Query: 128 aaatgttagaatgatttacatttgtgaaacggaggaagtat 168
           ||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 66  aaatgctagaatgatttaca-ttgtgaaacggagggagtat 105