miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40162_ath-MIR839:mirbase
Length = 264
Score = 523 bits (264), Expect = e-149
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 ctcactcatgtgagcagaaagagtagcatgatattttcttcaaggtctttaccaaccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcactcatgtgagcagaaagagtagcatgatattttcttcaaggtctttaccaaccttt 60
Query: 61 catcgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtgctgagccgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catcgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtgctgagccgatg 120
Query: 121 agcctctaatgaaattatagactcatcggctcaggaccattgcggttgtgcaaaacggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcctctaatgaaattatagactcatcggctcaggaccattgcggttgtgcaaaacggtg 180
Query: 181 ttattgctgagaagggaacgcatgagaggttggtaaagacctcaatggaatcttatggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttattgctgagaagggaacgcatgagaggttggtaaagacctcaatggaatcttatggta 240
Query: 241 ctctttttgctcacatgagtgagt 264
||||||||||||||||||||||||
Sbjct: 241 ctctttttgctcacatgagtgagt 264
Score = 121 bits (61), Expect = 3e-28
Identities = 218/265 (82%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 1 ctcactcatgtgagcagaaagagtagcatgatattttcttcaaggtctttaccaaccttt 60
|||||||||||||||| |||||||| ||| | ||| || | ||||||||||||||| |
Sbjct: 263 ctcactcatgtgagcaaaaagagtaccataagattccattga-ggtctttaccaacctct 205
Query: 61 cat-cgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtgctgagccgat 119
||| ||||||||||| |||||||| | |||||||| ||||| || || ||||||||||
Sbjct: 204 catgcgttcccttctcagcaataacaccgttttgcacaaccgcaatggtcctgagccgat 145
Query: 120 gagcctctaatgaaattatagactcatcggctcaggaccattgcggttgtgcaaaacggt 179
||| || |||| |||| || ||||||||||||| || || ||||| |||||||| |
Sbjct: 144 gagtctataatttcattagaggctcatcggctcagcactatcacggttttgcaaaacagc 85
Query: 180 gttattgctgagaagggaacgcatgagaggttggtaaagacc-tcaatggaatcttatgg 238
|||||||| ||||||||||| |||| ||||||||||||||| | || ||| | |||
Sbjct: 84 gttattgcaaagaagggaacg-atgaaaggttggtaaagaccttgaagaaaatatcatgc 26
Query: 239 tactctttttgctcacatgagtgag 263
|||||||| ||||||||||||||||
Sbjct: 25 tactctttctgctcacatgagtgag 1
>39921_aly-MIR839:mirbase
Length = 298
Score = 244 bits (123), Expect = 3e-65
Identities = 183/203 (90%)
Strand = Plus / Plus
Query: 46 tctttaccaacctttcatcgttcccttctttgcaataacgctgttttgcaaaaccgtgat 105
|||| |||||||| ||||||||||||||| || ||||||| |||||||||||| | ||
Sbjct: 63 tcttcaccaacctctcatcgttcccttctctgtaataacgtcgttttgcaaaactgcaat 122
Query: 106 agtgctgagccgatgagcctctaatgaaattatagactcatcggctcaggaccattgcgg 165
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggtcctgagccgataagcctctaatgaaattatagactcatcggctcaggaccattgcgg 182
Query: 166 ttgtgcaaaacggtgttattgctgagaagggaacgcatgagaggttggtaaagacctcaa 225
|||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||
Sbjct: 183 ttgtgcaaaacggtgttattgccgagaagggaacgcatgagaggttggtgaaaacgtcaa 242
Query: 226 tggaatcttatggtactcttttt 248
|| ||||||| ||||||||||
Sbjct: 243 agggctcttatgctactcttttt 265
Score = 115 bits (58), Expect = 2e-26
Identities = 172/206 (83%), Gaps = 3/206 (1%)
Strand = Plus / Minus
Query: 51 accaacctttcat-cgttcccttctttgcaataacgctgttttgcaaaaccgtgatagtg 109
|||||||| |||| ||||||||||| |||||||| | |||||||| ||||| || ||
Sbjct: 231 accaacctctcatgcgttcccttctcggcaataacaccgttttgcacaaccgcaatggtc 172
Query: 110 ctgagccgatgagcctctaatgaaattatagactcatcggctcaggaccattgcggttgt 169
||||||||||||| || |||| |||| || || ||||||||||||||||||| ||| |
Sbjct: 171 ctgagccgatgagtctataatttcattagaggcttatcggctcaggaccattgcagtttt 112
Query: 170 gcaaaacggtgttattgctgagaagggaacgcatgagaggttggtaaagacctcaatgga 229
|||||||| |||||| | |||||||||||| ||||||||||||| |||| |||| |||
Sbjct: 111 gcaaaacgacgttattacagagaagggaacg-atgagaggttggtgaagatgtcaaagga 53
Query: 230 -atcttatggtactctttttgctcac 254
| |||||| |||||||| |||||||
Sbjct: 52 gagcttatgctactctttgtgctcac 27
