miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40169_ath-MIR845a:mirbase
Length = 163
Score = 323 bits (163), Expect = 2e-89
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 agataagggattgcacgatttctcaatagttccgtcgctgcgtttccatcacgtcgattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agataagggattgcacgatttctcaatagttccgtcgctgcgtttccatcacgtcgattg 60
Query: 61 ctgtcagagccacgcctatgaagaatttgtgcggctctgataccaattgatgctatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtcagagccacgcctatgaagaatttgtgcggctctgataccaattgatgctatggaa 120
Query: 121 acatcgatattgcctgattccgtgtttccttttaccttgttgt 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acatcgatattgcctgattccgtgtttccttttaccttgttgt 163
>39926_aly-MIR845a:mirbase
Length = 115
Score = 165 bits (83), Expect = 1e-41
Identities = 107/115 (93%)
Strand = Plus / Plus
Query: 23 tcaatagttccgtcgctgcgtttccatcacgtcgattgctgtcagagccacgcctatgaa 82
||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tcaatagttccatcgctcggtttccatcacgtcgattggtgtcagagccacgcctatgaa 60
Query: 83 gaatttgtgcggctctgataccaattgatgctatggaaacatcgatattgcctga 137
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 61 aaatttgcgcggctctgataccagttgatgcaatggaaacatcgatattgcctga 115
>40170_ath-MIR845b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 94 gctctgataccaa-ttgatgctatggaaacatcgat 128
||||||||||||| ||||||| ||||||||||||||
Sbjct: 63 gctctgataccaaattgatgcaatggaaacatcgat 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 gtttccatcacgtcgattgctgtcagagccacgc 75
|||||||||||||| |||||| ||||||| ||||
Sbjct: 6 gtttccatcacgtcaattgctatcagagcaacgc 39
>39927_aly-MIR845b:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 94 gctctgataccaattgatgctatggaaacatcgatattgc 133
||||||||||||| |||||| ||| |||||| ||||||||
Sbjct: 72 gctctgataccaaatgatgcaatgtaaacatggatattgc 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 94 gctctgataccaattgatgctatggaaac 122
||||||||||||||||||| ||||||||
Sbjct: 43 gctctgataccaattgatgtgatggaaac 15
>41695_vvi-MIR845c:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 ggctctgataccaattgatgc 113
|||||||||||||||||||||
Sbjct: 61 ggctctgataccaattgatgc 81
>41697_vvi-MIR845e:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 ggctctgataccaattgatg 112
||||||||||||||||||||
Sbjct: 102 ggctctgataccaattgatg 121
>41696_vvi-MIR845d:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 ggctctgataccaattgatg 112
||||||||||||||||||||
Sbjct: 102 ggctctgataccaattgatg 121
