miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 144 atccaaccaaaattctttatattttgtaacggagggagtatat 186
||||||||||||| |||||||||| | ||||||||||||||||
Sbjct: 76 atccaaccaaaatcctttatatttaggaacggagggagtatat 118
>RF00906;MIR1122;AC093953.2/44822-44955 39947:Oryza sativa Japonica
Group
Length = 134
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 129 gctaggaaatgtccaatccaaccaaaattctttatattttgtaacggagggagtatat 186
|||||||||| |||||||| ||||||| | |||||||||| |||||||||||||||
Sbjct: 76 gctaggaaatatccaatccgtccaaaatcccttatattttgggacggagggagtatat 133
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 58.0 bits (29), Expect = 5e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 130 ctaggaaatgtccaatccaaccaaaattctttatattttgtaacggagggagtatat 186
|||||| |||||| ||||||||||||| |||||||||| |||||||||||||||
Sbjct: 58 ctaggatatgtcctatccaaccaaaatcacttatattttgggacggagggagtatat 2
>RF00906;MIR1122;AACV01002075.1/518-362 39947:Oryza sativa Japonica
Group
Length = 157
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 138 tgtccaatccaaccaaaattctttatattttgtaacggagggagta 183
||||| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 108 tgtcccatccaaccaaaactccttatattttgggacggagggagta 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 64/77 (83%), Gaps = 8/77 (10%)
Strand = Plus / Minus
Query: 23 tactccttccgtcccaaaatataattaagtagtttcggttggatggaacacgtcctagct 82
|||||| |||||||||||||| |||| ||||| |||||||||| |||| || ||
Sbjct: 153 tactccctccgtcccaaaata----taaggagttttggttggatgggacacatc----ct 102
Query: 83 agtactacgaatctaga 99
|||||||||||||||||
Sbjct: 101 agtactacgaatctaga 85
>RF00906;MIR1122;AAAA02003606.1/3920-3764 39946:Oryza sativa Indica
Group
Length = 157
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 138 tgtccaatccaaccaaaattctttatattttgtaacggagggagta 183
||||| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 108 tgtcccatccaaccaaaactccttatattttgggacggagggagta 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 64/77 (83%), Gaps = 8/77 (10%)
Strand = Plus / Minus
Query: 23 tactccttccgtcccaaaatataattaagtagtttcggttggatggaacacgtcctagct 82
|||||| |||||||||||||| |||| ||||| |||||||||| |||| || ||
Sbjct: 153 tactccctccgtcccaaaata----taaggagttttggttggatgggacacatc----ct 102
Query: 83 agtactacgaatctaga 99
|||||||||||||||||
Sbjct: 101 agtactacgaatctaga 85
>RF00906;MIR1122;AC079888.10/111519-111651 39947:Oryza sativa
Japonica Group
Length = 133
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 150 ccaaaattctttatattttgtaacggagggagta 183
||||||| |||||||||||| |||||||||||||
Sbjct: 96 ccaaaatcctttatattttggaacggagggagta 129
>RF00906;MIR1122;AAAA02026694.1/32137-32261 39946:Oryza sativa
Indica Group
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 144 atccaaccaaaattctttatattttgtaacggagggagtat 184
||||||||||||| | |||||||||| |||||||||||||
Sbjct: 82 atccaaccaaaatcccttatattttgggacggagggagtat 122
>RF00906;MIR1122;AAAA02018804.1/15100-15261 39946:Oryza sativa
Indica Group
Length = 162
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tactccttccgtcccaaaatataa 46
||||||||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaatataa 28
>RF00906;MIR1122;AACV01015310.1/18952-18817 39947:Oryza sativa
Japonica Group
Length = 136
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 ttactccttccgtcccaaaatata 45
||||||||||||||||||||||||
Sbjct: 133 ttactccttccgtcccaaaatata 110
>RF00906;MIR1122;AACV01021941.1/12785-12674 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tactccttccgtcccaaaatataa 46
||||||||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaatataa 28
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 49/57 (85%), Gaps = 4/57 (7%)
Strand = Plus / Minus
Query: 23 tactccttccgtcccaaaatataattaagtagtttcggttggatggaacacgtccta 79
|||||| ||||||||||||||||| | ||||| ||||||||||||||| |||||
Sbjct: 118 tactccctccgtcccaaaatataa----ggagttttggttggatggaacacatccta 66
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 144 atccaaccaaaattctttatattttgtaacggagggagta 183
|||||||||||| || |||||||||| ||||||||||||
Sbjct: 79 atccaaccaaaactccttatattttgggacggagggagta 118
>RF00906;MIR1122;AK288546.1/1340-1246 39947:Oryza sativa Japonica
Group
Length = 95
Score = 48.1 bits (24), Expect = 5e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 138 tgtccaatccaaccaaaattctttatattttgtaacggagggagtata 185
|||| |||||| ||| ||| |||||||||||| ||||||||||||||
Sbjct: 46 tgtcaaatccatccataatcctttatattttgggacggagggagtata 93
>RF00906;MIR1122;AP008213.1/4595979-4596114 39947:Oryza sativa
Japonica Group
Length = 136
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttactccttccgtcccaaaatata 45
||||||||||||||||||||||||
Sbjct: 4 ttactccttccgtcccaaaatata 27
>RF00906;MIR1122;AAAA02001100.1/19725-19807 39946:Oryza sativa
Indica Group
Length = 83
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttactccttccgtcccaaaatata 45
||||||||||||||||||||||||
Sbjct: 4 ttactccttccgtcccaaaatata 27
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 160 ttatattttgtaacggagggagtatat 186
|||||||||| ||||||||||||||||
Sbjct: 95 ttatattttggaacggagggagtatat 121
>RF00906;MIR1122;AC146567.10/114656-114521 3880:Medicago truncatula
(barrel medic)
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 tatattttgtaacggagggagta 183
|||||||||||||||||||||||
Sbjct: 110 tatattttgtaacggagggagta 132
>RF00906;MIR1122;AACV01021484.1/7074-6919 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 20 acttactccttccgtcccaaaatataa 46
||||||||| |||||||||||||||||
Sbjct: 155 acttactccatccgtcccaaaatataa 129
>RF00906;MIR1122;AAAA02030895.1/76159-76029 39946:Oryza sativa
Indica Group
Length = 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 144 atccaaccaaaattctttatattttgtaacggagggagtatat 186
||||||||||||| |||||||||| |||||||||||||||
Sbjct: 44 atccaaccaaaatcctttatatttaagtacggagggagtatat 2
>RF00906;MIR1122;AP008213.1/14562972-14563105 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 81 ctagtactacgaatctagatagacagc 107
|||||||||||||||||||||| ||||
Sbjct: 78 ctagtactacgaatctagataggcagc 52
>RF00906;MIR1122;AL663019.2/125395-125517 39947:Oryza sativa
Japonica Group
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 19 gacttactccttccgtcccaaaatata 45
|||||||||| ||||||||||||||||
Sbjct: 1 gacttactccatccgtcccaaaatata 27
>RF00906;MIR1122;AAAA02021800.1/3616-3483 39946:Oryza sativa Indica
Group
Length = 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 81 ctagtactacgaatctagatagacagc 107
|||||||||||||||||||||| ||||
Sbjct: 57 ctagtactacgaatctagataggcagc 83
>RF00906;MIR1122;AAAA02004745.1/3305-3414 39946:Oryza sativa Indica
Group
Length = 110
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 152 aaaattctttatattttgtaacggagggagtatat 186
||||||||||||||||| |||||||| |||||||
Sbjct: 36 aaaattctttatattttagaacggaggtagtatat 2
>RF00906;MIR1122;AAAA02004166.1/9974-9858 39946:Oryza sativa Indica
Group
Length = 117
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 accaaaattctttatattttgtaacggagggagta 183
|||||||| ||||||||| ||| ||||||||||||
Sbjct: 79 accaaaatcctttatattatgtgacggagggagta 113
>RF00906;MIR1122;AAAA02029450.1/6704-6860 39946:Oryza sativa Indica
Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 20 acttactccttccgtcccaaaatataa 46
||||||||| |||||||||||||||||
Sbjct: 156 acttactccatccgtcccaaaatataa 130
>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
Indica Group
Length = 120
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 160 ttatattttgtaacggagggagtatat 186
|||||||||| ||||||||||||||||
Sbjct: 28 ttatattttgaaacggagggagtatat 2
>RF00906;MIR1122;AC105262.3/31526-31369 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 ctagtactacgaatctagataga 103
|||||||||||||||||||||||
Sbjct: 55 ctagtactacgaatctagataga 77
>RF00906;MIR1122;AACV01013612.1/22689-22534 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 144 atccaaccaaaattctttatattttgtaacggagggagtatat 186
||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 113 atccaaccaaaatcccttatatttagggacggagggagtatat 155
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 144 atccaaccaaaattctttatattttgtaacggagggagtatat 186
||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 88 atccaaccaaaatcttttatattttgggacagagggagtatat 130
>RF00906;MIR1122;AACV01024869.1/7310-7232 39947:Oryza sativa
Japonica Group
Length = 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tactccttccgtcccaaaatata 45
|||||||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaatata 27
>RF00906;MIR1122;AC226706.2/62906-62750 63629:Oryza minuta
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 150 ccaaaattctttatattttgtaacggagggagtat 184
||||||||| |||||||||| |||||||||||||
Sbjct: 120 ccaaaattccttatattttgggacggagggagtat 154
>RF00906;MIR1122;AP008217.1/27843705-27843861 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 137 atgtccaatccaaccaaaattctttatattttgtaacggagggagta 183
|||||| ||||| ||||||| |||||||||||| ||| ||||||||
Sbjct: 107 atgtcccatccacccaaaatcctttatattttgggacgaagggagta 153
>RF00906;MIR1122;AAAA02016762.1/20933-20809 39946:Oryza sativa
Indica Group
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 130 ctaggaaatgtccaatccaaccaaaattctttatattttgtaacggagggagtat 184
|||||| ||||| ||||| ||||||| ||||||||||| |||| |||||||||
Sbjct: 58 ctaggatatgtcacatccacccaaaatcttttatattttggaacgaagggagtat 4
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 151 caaaattctttatattttgtaacggagggagtata 185
|||||| | ||||||||||| ||||||||||||||
Sbjct: 89 caaaatcccttatattttgtgacggagggagtata 123
>RF00906;MIR1122;AACV01007572.1/20450-20296 39947:Oryza sativa
Japonica Group
Length = 155
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 130 ctaggaaatgtccaatccaaccaaaattctttatattttgtaacggagggagtat 184
|||||| ||||| ||||||||||||| | |||||||| | |||||||||||||
Sbjct: 98 ctaggatatgtcacatccaaccaaaatcccttatatttagggacggagggagtat 152
>RF01058;MIR806;AP008218.1/10634178-10633943 39947:Oryza sativa
Japonica Group
Length = 236
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tactccttccgtcccaaaatat 44
||||||||||||||||||||||
Sbjct: 2 tactccttccgtcccaaaatat 23
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 160 ttatattttgtaacggagggagtata 185
|||||||||| |||||||||||||||
Sbjct: 140 ttatattttggaacggagggagtata 165
>RF00906;MIR1122;AP008209.1/22479538-22479413 39947:Oryza sativa
Japonica Group
Length = 126
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cttactccttccgtcccaaaatataa 46
|||||||| |||||||||||||||||
Sbjct: 124 cttactccatccgtcccaaaatataa 99
>RF00906;MIR1122;AP008213.1/3607812-3607697 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 8e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 130 ctaggaaatgtccaatccaaccaaaattctttatattttgtaacggagggagta 183
|||||||||||| || || ||||||| | |||||||||| ||||||||||||
Sbjct: 59 ctaggaaatgtctcatacatccaaaatcccttatattttgggacggagggagta 112
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 151 caaaattctttatattttgtaacggagggagtat 184
|||||| | |||||||||| ||||||||||||||
Sbjct: 59 caaaatcccttatattttggaacggagggagtat 92
>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cttactccttccgtcccaaaatataa 46
|||||||| |||||||||||||||||
Sbjct: 98 cttactccctccgtcccaaaatataa 73
>RF00906;MIR1122;AP008209.1/32841988-32841849 39947:Oryza sativa
Japonica Group
Length = 140
Score = 44.1 bits (22), Expect = 8e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 138 tgtccaatccaaccaaaattctttatattttgtaacggagggagta 183
||||| ||||| ||||||| | |||||||||| ||||||||||||
Sbjct: 91 tgtcccatccatccaaaatcccttatattttgggacggagggagta 136
