miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 2 tggtcgagtgttaagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtg 61
Query: 61 cggaatggagaagactctgaagctggcagtcgagta 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 cggaatggagaagactctgaagctggcagtcgagta 97
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 139 bits (70), Expect = 4e-34
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 1 ggtcgagtgattagttggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 60
Query: 62 ggaatggagaagactctgaagctggcagtcgagt 95
| ||||||||||||||||||||||||| ||||||
Sbjct: 61 gaaatggagaagactctgaagctggcaatcgagt 94
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 4 tcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcgg 63
||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct: 1 tcgagtgattagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcgg 60
Query: 64 aatggagaagactctgaagctggcagtcga 93
||||||||||||||||||||||||| ||||
Sbjct: 61 aatggagaagactctgaagctggcaatcga 90
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 135 bits (68), Expect = 6e-33
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
|||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
Query: 61 cggaatggagaagactctgaagctggcagtcgagta 96
| || | |||||||||||||||||||||||||||||
Sbjct: 62 cagatttgagaagactctgaagctggcagtcgagta 97
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 127 bits (64), Expect = 2e-30
Identities = 79/84 (94%)
Strand = Plus / Minus
Query: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct: 206 tggtcgagtgaatagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtg 147
Query: 61 cggaatggagaagactctgaagct 84
||||||||||||||||||||||||
Sbjct: 146 cggaatggagaagactctgaagct 123
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 85
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 1 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtctagttgagtgc 60
Query: 62 ggaatggagaagactctgaagct 84
|||||| ||||||||||||||||
Sbjct: 61 ggaatgaagaagactctgaagct 83
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 115 bits (58), Expect = 6e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 3 gtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcg 62
||||||||| || |||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct: 4 gtcgagtgaatagatggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcg 63
Query: 63 gaatggagaagactctgaagct 84
||||||||||||||||||||||
Sbjct: 64 gaatggagaagactctgaagct 85
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 111 bits (56), Expect = 9e-26
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
|||||||||| ||||||||||||||||| |||||||| ||||||| ||||| ||||| ||
Sbjct: 1 tggtcgagtggtaagctggagtcttcttttcttccttttgctcgagtgtctagttgaatg 60
Query: 61 cggaatggagaagactctgaagctggcagtcgagta 96
| |||| ||||||||| ||||||||||||||||||
Sbjct: 61 cagaatatagaagactccgaagctggcagtcgagta 96
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 111 bits (56), Expect = 9e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 20 tggtcgagtgaatagctggagtcttcttatcttccttgtgctcgtgtgtctggttgagtg 79
Query: 61 cggaatggagaagactctgaagct 84
||||||| ||||| ||||||||||
Sbjct: 80 cggaatgaagaaggctctgaagct 103
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 109 bits (55), Expect = 4e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 1 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 60
Query: 62 ggaatggagaagactctgaagct 84
|||||| ||||| ||||||||||
Sbjct: 61 ggaatgaagaaggctctgaagct 83
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| | ||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 161 ggtcgagtgaataactggagtcttcttttcttccttgtgctcgagtgtctggttaagtgc 102
Query: 62 ggaatggagaagactctgaagct 84
|||||| ||||| ||||||||||
Sbjct: 101 ggaatgaagaaggctctgaagct 79
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 99.6 bits (50), Expect = 4e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgacaagtcggagtcttcttctcttcctcatgctcgagtgtctggttgagtgc 89
Query: 62 ggaatggagaagactctgaagc 83
||||| ||||||||||| ||||
Sbjct: 90 ggaatcgagaagactctaaagc 111
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 99.6 bits (50), Expect = 4e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgacaagtcggagtcttcttctcttcctcatgctcgagtgtctggttgagtgc 89
Query: 62 ggaatggagaagactctgaagc 83
||||| ||||||||||| ||||
Sbjct: 90 ggaatcgagaagactctaaagc 111
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 115 ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 56
Query: 62 ggaatggagaagactctgaagc 83
||||| ||||||| ||| ||||
Sbjct: 55 ggaatcgagaagaatctaaagc 34
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 89
Query: 62 ggaatggagaagactctgaagc 83
||||| ||||||| ||| ||||
Sbjct: 90 ggaatcgagaagaatctaaagc 111
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgaataactggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
Query: 62 gg 63
||
Sbjct: 90 gg 91
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
Query: 62 gg 63
||
Sbjct: 90 gg 91
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 89
Query: 62 ggaatggagaagactctgaagc 83
||||| ||||||| ||| ||||
Sbjct: 90 ggaatcgagaagaatctaaagc 111
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 89
Query: 62 ggaatggagaagactctgaagc 83
||||| ||||||| ||| ||||
Sbjct: 90 ggaatcgagaagaatctaaagc 111
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgaatagctggagtcttcttttcctccttgtgctcgagtgtctggttgagtgc 89
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 30 ggtcgagtgatatgctggagtcttctattcttccttgtgctcgagtgtctagttgagtgc 89
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
|||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgaatagctggactcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
>47903_ath-miRf10803-akr:pmrd
Length = 149
Score = 75.8 bits (38), Expect = 5e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 51 tggttgagtgcggaatggagaagactctgaagctggcagtcgagta 96
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tggttgagtgcggaatggagaagacagtgaagctggcagtcgagta 50
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgatgagccaaagtcttcttctcttcctgatgctcgaatgtctggttgagtgc 89
Query: 62 gg 63
||
Sbjct: 90 gg 91
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 23 cttcttctcttccttgtgctcgattgtctggttgagtgcgg 63
|||||| |||||||||||||||| |||||||||||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
>47269_ath-miRf10169-akr:pmrd
Length = 253
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 47 tgtctggttgagtgcggaatggagaagactctgaagct 84
|||||||||||||||| |||||||| || ||||||||
Sbjct: 8 tgtctggttgagtgcgaaatggagatgatgctgaagct 45
