miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>47115_ath-miRf10015-akr:pmrd
          Length = 98

 Score =  167 bits (84), Expect = 2e-42
 Identities = 93/96 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
          |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 2  tggtcgagtgttaagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtg 61

                                              
Query: 61 cggaatggagaagactctgaagctggcagtcgagta 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 62 cggaatggagaagactctgaagctggcagtcgagta 97




>47645_ath-miRf10545-akr:pmrd
          Length = 94

 Score =  139 bits (70), Expect = 4e-34
 Identities = 88/94 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 1  ggtcgagtgattagttggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 60

                                            
Query: 62 ggaatggagaagactctgaagctggcagtcgagt 95
          | ||||||||||||||||||||||||| ||||||
Sbjct: 61 gaaatggagaagactctgaagctggcaatcgagt 94




>47615_ath-miRf10515-akr:pmrd
          Length = 90

 Score =  139 bits (70), Expect = 4e-34
 Identities = 85/90 (94%)
 Strand = Plus / Plus

                                                                      
Query: 4  tcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcgg 63
          ||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct: 1  tcgagtgattagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcgg 60

                                        
Query: 64 aatggagaagactctgaagctggcagtcga 93
          ||||||||||||||||||||||||| ||||
Sbjct: 61 aatggagaagactctgaagctggcaatcga 90




>47525_ath-miRf10425-akr:pmrd
          Length = 98

 Score =  135 bits (68), Expect = 6e-33
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
          |||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 2  tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61

                                              
Query: 61 cggaatggagaagactctgaagctggcagtcgagta 96
          | || | |||||||||||||||||||||||||||||
Sbjct: 62 cagatttgagaagactctgaagctggcagtcgagta 97




>48180_ath-miRf11080-akr:pmrd
          Length = 235

 Score =  127 bits (64), Expect = 2e-30
 Identities = 79/84 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
           |||||||||||  ||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct: 206 tggtcgagtgaatagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtg 147

                                   
Query: 61  cggaatggagaagactctgaagct 84
           ||||||||||||||||||||||||
Sbjct: 146 cggaatggagaagactctgaagct 123




>47186_ath-miRf10086-akr:pmrd
          Length = 85

 Score =  119 bits (60), Expect = 4e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 85




>47125_ath-miRf10025-akr:pmrd
          Length = 94

 Score =  117 bits (59), Expect = 1e-27
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||  ||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 1  ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtctagttgagtgc 60

                                 
Query: 62 ggaatggagaagactctgaagct 84
          |||||| ||||||||||||||||
Sbjct: 61 ggaatgaagaagactctgaagct 83




>47725_ath-miRf10625-akr:pmrd
          Length = 92

 Score =  115 bits (58), Expect = 6e-27
 Identities = 76/82 (92%)
 Strand = Plus / Plus

                                                                      
Query: 3  gtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcg 62
          |||||||||  || |||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct: 4  gtcgagtgaatagatggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcg 63

                                
Query: 63 gaatggagaagactctgaagct 84
          ||||||||||||||||||||||
Sbjct: 64 gaatggagaagactctgaagct 85




>47494_ath-miRf10394-akr:pmrd
          Length = 96

 Score =  111 bits (56), Expect = 9e-26
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
          |||||||||| ||||||||||||||||| |||||||| ||||||| ||||| ||||| ||
Sbjct: 1  tggtcgagtggtaagctggagtcttcttttcttccttttgctcgagtgtctagttgaatg 60

                                              
Query: 61 cggaatggagaagactctgaagctggcagtcgagta 96
          | ||||  ||||||||| ||||||||||||||||||
Sbjct: 61 cagaatatagaagactccgaagctggcagtcgagta 96




>47304_ath-miRf10204-akr:pmrd
          Length = 132

 Score =  111 bits (56), Expect = 9e-26
 Identities = 77/84 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
           |||||||||||  ||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 20  tggtcgagtgaatagctggagtcttcttatcttccttgtgctcgtgtgtctggttgagtg 79

                                   
Query: 61  cggaatggagaagactctgaagct 84
           ||||||| ||||| ||||||||||
Sbjct: 80  cggaatgaagaaggctctgaagct 103




>47247_ath-miRf10147-akr:pmrd
          Length = 94

 Score =  109 bits (55), Expect = 4e-25
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||  ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 1  ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 60

                                 
Query: 62 ggaatggagaagactctgaagct 84
          |||||| ||||| ||||||||||
Sbjct: 61 ggaatgaagaaggctctgaagct 83




>47888_ath-miRf10788-akr:pmrd
          Length = 194

 Score =  101 bits (51), Expect = 9e-23
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           ||||||||||  | ||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 161 ggtcgagtgaataactggagtcttcttttcttccttgtgctcgagtgtctggttaagtgc 102

                                  
Query: 62  ggaatggagaagactctgaagct 84
           |||||| ||||| ||||||||||
Sbjct: 101 ggaatgaagaaggctctgaagct 79




>48099_ath-miRf10999-akr:pmrd
          Length = 148

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           |||||||||| |||  |||||||||||||||||||  ||||||| |||||||||||||||
Sbjct: 30  ggtcgagtgacaagtcggagtcttcttctcttcctcatgctcgagtgtctggttgagtgc 89

                                 
Query: 62  ggaatggagaagactctgaagc 83
           ||||| ||||||||||| ||||
Sbjct: 90  ggaatcgagaagactctaaagc 111




>47488_ath-miRf10388-akr:pmrd
          Length = 148

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           |||||||||| |||  |||||||||||||||||||  ||||||| |||||||||||||||
Sbjct: 30  ggtcgagtgacaagtcggagtcttcttctcttcctcatgctcgagtgtctggttgagtgc 89

                                 
Query: 62  ggaatggagaagactctgaagc 83
           ||||| ||||||||||| ||||
Sbjct: 90  ggaatcgagaagactctaaagc 111




>48098_ath-miRf10998-akr:pmrd
          Length = 140

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           |||||||||| |||  |||||||||||||||| ||  ||||||| |||||||||||||||
Sbjct: 115 ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 56

                                 
Query: 62  ggaatggagaagactctgaagc 83
           ||||| ||||||| ||| ||||
Sbjct: 55  ggaatcgagaagaatctaaagc 34




>47818_ath-miRf10718-akr:pmrd
          Length = 148

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           |||||||||| |||  |||||||||||||||| ||  ||||||| |||||||||||||||
Sbjct: 30  ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 89

                                 
Query: 62  ggaatggagaagactctgaagc 83
           ||||| ||||||| ||| ||||
Sbjct: 90  ggaatcgagaagaatctaaagc 111




>47369_ath-miRf10269-akr:pmrd
          Length = 91

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||  | ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgaataactggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 89

            
Query: 62 gg 63
          ||
Sbjct: 90 gg 91




>47246_ath-miRf10146-akr:pmrd
          Length = 91

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||  ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89

            
Query: 62 gg 63
          ||
Sbjct: 90 gg 91




>47173_ath-miRf10073-akr:pmrd
          Length = 148

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           |||||||||| |||  |||||||||||||||| ||  ||||||| |||||||||||||||
Sbjct: 30  ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 89

                                 
Query: 62  ggaatggagaagactctgaagc 83
           ||||| ||||||| ||| ||||
Sbjct: 90  ggaatcgagaagaatctaaagc 111




>47172_ath-miRf10072-akr:pmrd
          Length = 148

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
           |||||||||| |||  |||||||||||||||| ||  ||||||| |||||||||||||||
Sbjct: 30  ggtcgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgc 89

                                 
Query: 62  ggaatggagaagactctgaagc 83
           ||||| ||||||| ||| ||||
Sbjct: 90  ggaatcgagaagaatctaaagc 111




>47372_ath-miRf10272-akr:pmrd
          Length = 91

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||  ||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgaatagctggagtcttcttttcctccttgtgctcgagtgtctggttgagtgc 89




>47253_ath-miRf10153-akr:pmrd
          Length = 91

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          |||||||||||| |||||||||||||  |||||||||||||||| ||||| |||||||||
Sbjct: 30 ggtcgagtgatatgctggagtcttctattcttccttgtgctcgagtgtctagttgagtgc 89




>47123_ath-miRf10023-akr:pmrd
          Length = 91

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||  ||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgaatagctggactcttcttttcttccttgtgctcgagtgtctggttgagtgc 89




>47903_ath-miRf10803-akr:pmrd
          Length = 149

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 51 tggttgagtgcggaatggagaagactctgaagctggcagtcgagta 96
          |||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 5  tggttgagtgcggaatggagaagacagtgaagctggcagtcgagta 50




>47242_ath-miRf10142-akr:pmrd
          Length = 91

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
          ||||||||||| |||   |||||||||||||||||  ||||||| |||||||||||||||
Sbjct: 30 ggtcgagtgatgagccaaagtcttcttctcttcctgatgctcgaatgtctggttgagtgc 89

            
Query: 62 gg 63
          ||
Sbjct: 90 gg 91




>47325_ath-miRf10225-akr:pmrd
          Length = 84

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 23 cttcttctcttccttgtgctcgattgtctggttgagtgcgg 63
          |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84




>47269_ath-miRf10169-akr:pmrd
          Length = 253

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 47 tgtctggttgagtgcggaatggagaagactctgaagct 84
          |||||||||||||||| |||||||| ||  ||||||||
Sbjct: 8  tgtctggttgagtgcgaaatggagatgatgctgaagct 45