miRNEST 2.0, an integrative microRNA resource :: BLAST
>40072_ath-MIR390a:mirbase
Length = 107
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgatgatcacattcgttatctattttttggcgctatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatgatgatcacattcgttatctattttttggcgctatcc 77
Query: 61 atcctgagttt 71
|||||||||||
Sbjct: 78 atcctgagttt 88
>39862_aly-MIR390a:mirbase
Length = 129
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgatgatcacattcgttatctattttttggcgctatcc 60
|||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgccatgatgatcttatttcatatcgattttttggcgctatcc 88
Query: 61 atcctgagttt 71
|||||||||||
Sbjct: 89 atcctgagttt 99
>40293_bna-MIR390b:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 2e-10
Identities = 63/72 (87%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgatgatcacattcgttatctat-tttttggcgctatc 59
||||||||||||||||||||||| ||||||||| | ||| || ||||||||||| ||
Sbjct: 18 aagctcaggagggatagcgccatcatgatcacacac---atcgatatttttggcgctgtc 74
Query: 60 catcctgagttt 71
||||||||||||
Sbjct: 75 catcctgagttt 86
>41640_vvi-MIR390:mirbase
Length = 140
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatga 25
|||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatga 35
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatga 25
|||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatga 35
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatga 25
|||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatga 35
>40294_bna-MIR390c:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatga 25
|||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatga 47
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tggcgctatccatcctgagtt 70
|||||||||||||||||||||
Sbjct: 83 tggcgctatccatcctgagtt 103
>39863_aly-MIR390b:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatga 25
|||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatga 43
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttggcgctatccatcctgagtt 70
||||||||||||||||||||||
Sbjct: 88 ttggcgctatccatcctgagtt 109
>41237_csi-MIR390:mirbase
Length = 154
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccatg 44
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tggcgctatccatcctgagttt 71
||||||||||||||||||||||
Sbjct: 96 tggcgctatccatcctgagttt 117
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagttt 106
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagttt 113
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagttt 110
>40468_gma-MIR390a:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagttt 86
>40467_gma-MIR390a:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagttt 86
>40372_rco-MIR390b:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatg 29
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 96 gcgctatccatcctgagttt 115
>40292_bna-MIR390a:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttggcgctatccatcctgagtt 70
||||||||||||||||||||||
Sbjct: 92 ttggcgctatccatcctgagtt 113
>40073_ath-MIR390b:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttggcgctatccatcctgagtt 70
||||||||||||||||||||||
Sbjct: 84 ttggcgctatccatcctgagtt 105
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccat 43
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccat 43
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 88 gcgctatccatcctgagttt 107
>40705_mtr-MIR390:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccat 28
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagttt 95
>40371_rco-MIR390a:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgatgatca 31
||||||||||||||||||||| ||| |||||
Sbjct: 6 aagctcaggagggatagcgccgtgaagatca 36
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tggcgctatccatcctgagttt 71
||||||||||||||||||||||
Sbjct: 80 tggcgctatccatcctgagttt 101
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tggcgctatccatcctgagttt 71
||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagttt 98
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 tggcgctatccatcctgagttt 71
||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagttt 98
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
