miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46998_ath-miR393a:pmrd
Length = 133
Score = 260 bits (131), Expect = 2e-70
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1 gaggaaggatccaaagggatcgcattgatcctaattaaggtgaattctccccatattttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaggaaggatccaaagggatcgcattgatcctaattaaggtgaattctccccatattttc 61
Query: 61 tttataattggcaaataaatcacaaaaatttgcttggttttggatcatgctatctctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tttataattggcaaataaatcacaaaaatttgcttggttttggatcatgctatctctttg 121
Query: 121 gattcatcctt 131
|||||||||||
Sbjct: 122 gattcatcctt 132
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 5 aaggatccaaagggatcgcattgatcctaattaag 39
|||||||||||||||||||||||||||||||||||
Sbjct: 7 aaggatccaaagggatcgcattgatcctaattaag 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 102 ggatcatgctatctctttggattcat 127
||||||||| ||||||||||||||||
Sbjct: 131 ggatcatgcgatctctttggattcat 156
>46999_ath-miR393b:pmrd
Length = 160
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 5 aaggatccaaagggatcgcattgatcctaattaag 39
|||||||||||||||||||||||||||||||||||
Sbjct: 6 aaggatccaaagggatcgcattgatcctaattaag 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 102 ggatcatgctatctctttggattcat 127
||||||||| ||||||||||||||||
Sbjct: 130 ggatcatgcgatctctttggattcat 155
>54470_sbi-miR393:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gaggaaggatccaaagggatcgcattgatcc 31
||||||| |||||||||||||||||||||||
Sbjct: 12 gaggaagcatccaaagggatcgcattgatcc 42
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 58 ttttggatcatgctatccctttggattcctcctt 91
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 16 atccaaagggatcgcattgatcc 38
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 55 ttttggatcatgctatccctttggattcctcctt 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 13 atccaaagggatcgcattgatcc 35
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 56 ttttggatcatgctatccctttggattcctcctt 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 13 atccaaagggatcgcattgatcc 35
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 56 ttttggatcatgctatccctttggattcctcctt 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 13 atccaaagggatcgcattgatcc 35
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 55 ttttggatcatgctatccctttggattcctcctt 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 13 atccaaagggatcgcattgatcc 35
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 41 ttttggatcatgctatccctttggattcctcctt 8
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 83 atccaaagggatcgcattgatcc 61
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcctt 131
||||||||||||||||| |||||||||| |||||
Sbjct: 59 ttttggatcatgctatccctttggattcctcctt 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 16 atccaaagggatcgcattgatcc 38
>48917_osa-miR393:pmrd
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 ggaaggatccaaagggatcgcattgatcct 32
||||| ||||||||||||||||||||||||
Sbjct: 4 ggaagcatccaaagggatcgcattgatcct 33
>48373_bna-miR393:pmrd
Length = 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatcctaat 35
||||||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcctaat 26
>54850_vvi-miR393b:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 99 tttggatcatgctatctctttggattcatcctt 131
|||||||||||||||| |||||||||| |||||
Sbjct: 48 tttggatcatgctatccctttggattcctcctt 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>51721_ptc-miR393b:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcct 130
||||||||||||||||| |||||||||| ||||
Sbjct: 52 ttttggatcatgctatccctttggattcctcct 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>51720_ptc-miR393a:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 98 ttttggatcatgctatctctttggattcatcct 130
||||||||||||||||| |||||||||| ||||
Sbjct: 53 ttttggatcatgctatccctttggattcctcct 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>48730_mtr-miR393:pmrd
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatccta 33
|||||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatccta 44
>48731_mtr-miR393b:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 5 atccaaagggatcgcattgatcc 27
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 102 ggatcatgctatctctttggattcat 127
||||||||||||| ||||||||||||
Sbjct: 94 ggatcatgctatccctttggattcat 119
>48576_gma-miR393:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atccaaagggatcgcattgatcc 31
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>55062_zma-miR393f:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatcc 31
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55057_zma-miR393a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatcc 31
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>54849_vvi-miR393a:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatcc 31
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tccaaagggatcgcattgatc 30
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
