miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 109 bits (55), Expect = 3e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 1 cggtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctct 60
||||||||||||| |||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 1 cggtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctct 60
Query: 61 tcctgatgctcgaatgtctggttgagtgcgg 91
|||| |||||||| |||||||||||||||||
Sbjct: 61 tcctcatgctcgagtgtctggttgagtgcgg 91
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 109 bits (55), Expect = 3e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 1 cggtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctct 60
||||||||||||| |||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 1 cggtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctct 60
Query: 61 tcctgatgctcgaatgtctggttgagtgcgg 91
| || ||||||||||||||||||||||||||
Sbjct: 61 ttctcatgctcgaatgtctggttgagtgcgg 91
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 109 bits (55), Expect = 3e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 1 cggtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctct 60
||||||||||||| |||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 1 cggtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctct 60
Query: 61 tcctgatgctcgaatgtctggttgagtgcgg 91
|||| |||||||| |||||||||||||||||
Sbjct: 61 tcctcatgctcgagtgtctggttgagtgcgg 91
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 109 bits (55), Expect = 3e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 1 cggtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctct 60
||||||||||||| |||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 1 cggtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctct 60
Query: 61 tcctgatgctcgaatgtctggttgagtgcgg 91
| || ||||||||||||||||||||||||||
Sbjct: 61 ttctcatgctcgaatgtctggttgagtgcgg 91
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 109 bits (55), Expect = 3e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 1 cggtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctct 60
||||||||||||| |||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 1 cggtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctct 60
Query: 61 tcctgatgctcgaatgtctggttgagtgcgg 91
| || ||||||||||||||||||||||||||
Sbjct: 61 ttctcatgctcgaatgtctggttgagtgcgg 91
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 101 bits (51), Expect = 8e-23
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 5 actcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttcct 64
||||||||| |||||||||||| |||||||||||| || | |||||||||||||| ||
Sbjct: 140 actcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctctttct 81
Query: 65 gatgctcgaatgtctggttgagtgcgg 91
||||||||||||||||||||||||||
Sbjct: 80 catgctcgaatgtctggttgagtgcgg 54
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 30 ggtcgagtgatgagccaaagtcttcttctcttcctgatgctcgaatgtctggttgagtgc 89
||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
Query: 90 gg 91
||
Sbjct: 62 gg 63
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 15 ggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttcctgatgctcgaa 74
||||||||||| | ||||||||||| ||| ||||||||||||||||| |||||||
Sbjct: 12 ggtggtcgagtgaatggtcgagtgataagctggagtcttcttctcttccttgtgctcgat 71
Query: 75 tgtctggttgagtg 88
||||||||||||||
Sbjct: 72 tgtctggttgagtg 85
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 63.9 bits (32), Expect = 2e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 30 ggtcgagtgatgagccaaagtcttcttctcttcctgatgctcgaatgtctggttgagtgc 89
||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 7e-11
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttc 62
||||||||||| ||||||||||| | |||||||||| ||| ||||||||| || ||
Sbjct: 3 gtactcgacccaggtggtcgagtgagaggtcgagtgaatagctggagtcttcttttcctc 62
Query: 63 ctgatgctcgaatgtctggttgagtgc 89
|| ||||||| |||||||||||||||
Sbjct: 63 cttgtgctcgagtgtctggttgagtgc 89
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 58.0 bits (29), Expect = 1e-09
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttc 62
||||||||||| ||||||||||| |||||||||| ||| ||||||||| |||||
Sbjct: 232 gtactcgacccaggtggtcgagtgtgtggtcgagtgaatagctggagtcttcttttcttc 173
Query: 63 ctgatgctcgaatgtctggttgagtgcgg 91
|| |||| || |||||||||||||||||
Sbjct: 172 cttgtgcttgagtgtctggttgagtgcgg 144
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 4e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 48 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 91
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 21 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 64
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcg 90
||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 19 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcg 61
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttc 62
||||||||||||| ||||||||| | ||||||||||| || |||||||| |||||
Sbjct: 3 gtactcgaccctgatggtcgagtgagaggtcgagtgatatgctggagtcttctattcttc 62
Query: 63 ctgatgctcgaatgtctggttgagtgc 89
|| ||||||| ||||| |||||||||
Sbjct: 63 cttgtgctcgagtgtctagttgagtgc 89
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 51 cttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
|||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttc 62
||||||||||| |||||||||| |||||||||| ||| ||||||||| |||||
Sbjct: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
Query: 63 ctgatgctcgaatgtctggttgagtgcgg 91
|| ||||||| ||| |||||||||||||
Sbjct: 63 cttgtgctcgagtgtatggttgagtgcgg 91
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| ||||||| ||||| |||||||||||
Sbjct: 21 agtcttcttttcttccttgtgctcgagtgtctagttgagtgcgg 64
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| |||| || |||||||||||||||||
Sbjct: 17 agtcttcttttcttccttgtgcttgagtgtctggttgagtgcgg 60
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| |||||| |||||||||||||||||
Sbjct: 39 agtcttcttatcttccttgtgctcgtgtgtctggttgagtgcgg 82
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| ||||||| ||| |||||||||||||
Sbjct: 19 agtcttcttttcttccttgtgctcgagtgtatggttgagtgcgg 62
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
||||||||| ||||||| ||||||| ||||| |||||||||||
Sbjct: 19 agtcttcttttcttccttgtgctcgagtgtctagttgagtgcgg 62
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 50 tcttcttctcttcctgatgctcgaatgtctggttgagtgc 89
||||||| ||||||| ||||||| |||||||||||||||
Sbjct: 50 tcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
>47938_ath-miRf10838-akr:pmrd
Length = 209
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgat 40
||||||||||| ||||||||||| | |||||||||||
Sbjct: 202 gtactcgacccaggtggtcgagtgagaggtcgagtgat 165
>47644_ath-miRf10544-akr:pmrd
Length = 250
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgat 40
||||||||||| ||||||||||| | |||||||||||
Sbjct: 6 gtactcgacccaggtggtcgagtgagaggtcgagtgat 43
