miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaataactggagtcttcttttct 60
Query: 61 tccttgtgctcgagtgtatggttgagtgcgg 91
||||||||||||||||| |||||||||||||
Sbjct: 61 tccttgtgctcgagtgtctggttgagtgcgg 91
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggactcttcttttct 60
Query: 61 tccttgtgctcgagtgtatggttgagtgc 89
||||||||||||||||| |||||||||||
Sbjct: 61 tccttgtgctcgagtgtctggttgagtgc 89
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtactcgacccaggtggtcgagtgagaggtcgagtgaatagctggagtcttcttttcc 60
Query: 61 tccttgtgctcgagtgtatggttgagtgc 89
||||||||||||||||| |||||||||||
Sbjct: 61 tccttgtgctcgagtgtctggttgagtgc 89
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Minus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
|||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 234 ctgtactcgacccaggtggtcgagtgtgtggtcgagtgaatagctggagtcttcttttct 175
Query: 61 tccttgtgctcgagtgtatggttgagtgcgg 91
|||||||||| |||||| |||||||||||||
Sbjct: 174 tccttgtgcttgagtgtctggttgagtgcgg 144
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Minus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 190 ctgtactcgacccatctggtcgagtgagaggtcgagtgaataactggagtcttcttttct 131
Query: 61 tccttgtgctcgagtgtatggttgagtgcgg 91
||||||||||||||||| ||||| |||||||
Sbjct: 130 tccttgtgctcgagtgtctggttaagtgcgg 100
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 60
Query: 90 gg 91
||
Sbjct: 61 gg 62
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtctagttgagtgc 60
Query: 90 gg 91
||
Sbjct: 61 gg 62
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 99.6 bits (50), Expect = 3e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 21 ggtcgagtgaatagctggagtcttcttatcttccttgtgctcgtgtgtctggttgagtgc 80
Query: 90 gg 91
||
Sbjct: 81 gg 82
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 31 gtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcg 90
||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 4 gtcgagtgaatagatggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcg 63
Query: 91 g 91
|
Sbjct: 64 g 64
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 97.6 bits (49), Expect = 1e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ggtcgagtgattagttggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 60
Query: 90 g 90
|
Sbjct: 61 g 61
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 97.6 bits (49), Expect = 1e-21
Identities = 80/91 (87%), Gaps = 7/91 (7%)
Strand = Plus / Plus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
|||||||| ||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgtactcaacccacgtagtcgagtgggaggtcgagtgaatagct-------tcttttct 53
Query: 61 tccttgtgctcgagtgtatggttgagtgcgg 91
||||||||||||||||| |||||||||||||
Sbjct: 54 tccttgtgctcgagtgtctggttgagtgcgg 84
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||
Sbjct: 1 ctgtactcgaccctgatggtcgagtgagaggtcgagtgatatgctggagtcttctattct 60
Query: 61 tccttgtgctcgagtgtatggttgagtgc 89
||||||||||||||||| | |||||||||
Sbjct: 61 tccttgtgctcgagtgtctagttgagtgc 89
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 32 tcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcgg 91
|||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 tcgagtgattagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcgg 60
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 91.7 bits (46), Expect = 8e-20
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 42 agctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcgg 91
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 agctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 64
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
|||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 2 ggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgc 61
Query: 90 gg 91
||
Sbjct: 62 gg 63
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 81.8 bits (41), Expect = 8e-17
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
|||||||||||| |||||||||| | |||||||||| || ||||||||||| |||||
Sbjct: 3 gtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctcttc 62
Query: 63 cttgtgctcgagtgtatggttgagtgcgg 91
|| ||||||||||| |||||||||||||
Sbjct: 63 ctcatgctcgagtgtctggttgagtgcgg 91
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 81.8 bits (41), Expect = 8e-17
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
|||||||||||| |||||||||| | |||||||||| || ||||||||||| |||||
Sbjct: 3 gtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctcttc 62
Query: 63 cttgtgctcgagtgtatggttgagtgcgg 91
|| ||||||||||| |||||||||||||
Sbjct: 63 ctcatgctcgagtgtctggttgagtgcgg 91
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 81.8 bits (41), Expect = 8e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 16 gtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagt 75
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 13 gtggtcgagtgaatggtcgagtgataagctggagtcttcttctcttccttgtgctcgatt 72
Query: 76 gtatggttgagtg 88
|| ||||||||||
Sbjct: 73 gtctggttgagtg 85
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
|||||||||| |||||||||||||||| |||||||| ||||||||||| | |||||||||
Sbjct: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
>47938_ath-miRf10838-akr:pmrd
Length = 209
Score = 65.9 bits (33), Expect = 5e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctgg 47
|||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 202 gtactcgacccaggtggtcgagtgagaggtcgagtgattagctgg 158
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 65.9 bits (33), Expect = 5e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
|||||||||||| |||||||||| | |||||||||| || ||||||||||| ||||
Sbjct: 3 gtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctcttt 62
Query: 63 cttgtgctcgagtgtatggttgagtgcgg 91
|| ||||||| ||| |||||||||||||
Sbjct: 63 ctcatgctcgaatgtctggttgagtgcgg 91
>47644_ath-miRf10544-akr:pmrd
Length = 250
Score = 65.9 bits (33), Expect = 5e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctgg 47
|||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 6 gtactcgacccaggtggtcgagtgagaggtcgagtgattagctgg 50
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 65.9 bits (33), Expect = 5e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
|||||||||||| |||||||||| | |||||||||| || ||||||||||| ||||
Sbjct: 3 gtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctcttt 62
Query: 63 cttgtgctcgagtgtatggttgagtgcgg 91
|| ||||||| ||| |||||||||||||
Sbjct: 63 ctcatgctcgaatgtctggttgagtgcgg 91
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 65.9 bits (33), Expect = 5e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
|||||||||||| |||||||||| | |||||||||| || ||||||||||| ||||
Sbjct: 3 gtactcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctcttt 62
Query: 63 cttgtgctcgagtgtatggttgagtgcgg 91
|| ||||||| ||| |||||||||||||
Sbjct: 63 ctcatgctcgaatgtctggttgagtgcgg 91
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 42 agctggagtcttcttttcttccttgtgctcgagtgt 77
|||||||||||||||||||||||| |||||||||||
Sbjct: 14 agctggagtcttcttttcttccttttgctcgagtgt 49
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 7e-11
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 5 actcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttcct 64
|||||||||| |||||||||| | |||||||||| || ||||||||||| |||| ||
Sbjct: 140 actcgacccaggtggtcgagtagtgggtcgagtgacaagtcggagtcttcttctctttct 81
Query: 65 tgtgctcgagtgtatggttgagtgcgg 91
||||||| ||| |||||||||||||
Sbjct: 80 catgctcgaatgtctggttgagtgcgg 54
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 3 gtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttcttc 62
||||||||||| |||||||||| |||||||||| ||| ||||||||| |||||
Sbjct: 3 gtactcgaccctggtggtcgagtaatgggtcgagtgatgagccaaagtcttcttctcttc 62
Query: 63 cttgtgctcgagtgtatggttgagtgcgg 91
|| ||||||| ||| |||||||||||||
Sbjct: 63 ctgatgctcgaatgtctggttgagtgcgg 91
