miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48166_ath-miRf11066-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 1 tccatcgcaaacattgcgagggatttgctactacgaacgctggaacttgcaactccctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tccatcgcaaacattgcgagggatttgctactacgaacgctggaacttgcaactccctcg 53
Query: 61 caggtttgctacagaaatattcattgcaaatccctcgcaaattttgcgagga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 caggtttgctacagaaatattcattgcaaatccctcgcaaattttgcgagga 1
>47753_ath-miRf10653-akr:pmrd
Length = 112
Score = 198 bits (100), Expect = 6e-52
Identities = 109/112 (97%)
Strand = Plus / Minus
Query: 1 tccatcgcaaacattgcgagggatttgctactacgaacgctggaacttgcaactccctcg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 112 tccatcgcaaacattgcgagggatttgctactacgatcgctggaacttgcaactccctcg 53
Query: 61 caggtttgctacagaaatattcattgcaaatccctcgcaaattttgcgagga 112
||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 52 caggtttgctatagaaatattcattgcaaatccctcgcaacttttgcgagga 1
>47425_ath-miRf10325-akr:pmrd
Length = 112
Score = 198 bits (100), Expect = 6e-52
Identities = 109/112 (97%)
Strand = Plus / Plus
Query: 1 tccatcgcaaacattgcgagggatttgctactacgaacgctggaacttgcaactccctcg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tccatcgcaaacattgcgagggatttgctactacgatcgctggaacttgcaactccctcg 60
Query: 61 caggtttgctacagaaatattcattgcaaatccctcgcaaattttgcgagga 112
||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 caggtttgctatagaaatattcattgcaaatccctcgcaacttttgcgagga 112
>48253_ath-miRf11153-akr:pmrd
Length = 112
Score = 151 bits (76), Expect = 1e-37
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 1 tccatcgcaaacattgcgagggatttgctactacgaacgctggaacttgcaactccctcg 60
||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| |||
Sbjct: 112 tccatcgcaaaagttgcgagggatttgctactacaaacgcaggaactcgcaactccttcg 53
Query: 61 caggtttgctacagaaatattcattgcaaatccctcgcaaattttgcgagga 112
|||||||||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct: 52 caggtttgctacagaattattgattgcaaatccctcgcaaagtttgcgagga 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcgcaaacattgcgagggatttgc 28
|||||||| |||||||||||||||
Sbjct: 4 tcgcaaactttgcgagggatttgc 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 gcaaatccctcgcaaattttgcga 109
||||||||||||||| ||||||||
Sbjct: 85 gcaaatccctcgcaacttttgcga 108
>47681_ath-miRf10581-akr:pmrd
Length = 112
Score = 151 bits (76), Expect = 1e-37
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 1 tccatcgcaaacattgcgagggatttgctactacgaacgctggaacttgcaactccctcg 60
||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||| |||
Sbjct: 112 tccatcgcaaaagttgcgagggatttgctactacaaacgcaggaactcgcaactccttcg 53
Query: 61 caggtttgctacagaaatattcattgcaaatccctcgcaaattttgcgagga 112
|||||||||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct: 52 caggtttgctacagaattattgattgcaaatccctcgcaaagtttgcgagga 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcgcaaacattgcgagggatttgc 28
|||||||| |||||||||||||||
Sbjct: 4 tcgcaaactttgcgagggatttgc 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 gcaaatccctcgcaaattttgcga 109
||||||||||||||| ||||||||
Sbjct: 85 gcaaatccctcgcaacttttgcga 108
>47682_ath-miRf10582-akr:pmrd
Length = 144
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 83 attgcaaatccctcgcaaattttgcgagga 112
||||||||||||||||||| ||||||||||
Sbjct: 143 attgcaaatccctcgcaaagtttgcgagga 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcgcaaacattgcgagggatttgc 28
|||||||| |||||||||||||||
Sbjct: 117 tcgcaaactttgcgagggatttgc 140
>47641_ath-miRf10541-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 ttgcaaatccctcgcaaattttgcgag 110
||||||||||||||||||| |||||||
Sbjct: 32 ttgcaaatccctcgcaaatcttgcgag 6
>47640_ath-miRf10540-akr:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 ttgcaaatccctcgcaaattttgcgag 110
||||||||||||||||||| |||||||
Sbjct: 40 ttgcaaatccctcgcaaatcttgcgag 14
>47114_ath-miRf10014-akr:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 gcaaatccctcgcaaattttgcgagga 112
||||||||||||||| |||||||||||
Sbjct: 136 gcaaatccctcgcaacttttgcgagga 110
>47959_ath-miRf10859-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 gcaaatccctcgcaaattttgcgagg 111
|||||||| |||||||||||||||||
Sbjct: 35 gcaaatccatcgcaaattttgcgagg 10
>47780_ath-miRf10680-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 gcaaatccctcgcaaattttgcgagg 111
|||||||| |||||||||||||||||
Sbjct: 35 gcaaatccatcgcaaattttgcgagg 10
>47908_ath-miRf10808-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 82 cattgcaaatccctcgcaaattttgcgag 110
|||||| |||||||||||||| |||||||
Sbjct: 40 cattgctaatccctcgcaaatattgcgag 12
>47508_ath-miRf10408-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 86 gcaaatccctcgcaaattttgcgag 110
|||| ||||||||||||||||||||
Sbjct: 100 gcaattccctcgcaaattttgcgag 76
>47507_ath-miRf10407-akr:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 86 gcaaatccctcgcaaattttgcgag 110
|||| ||||||||||||||||||||
Sbjct: 108 gcaattccctcgcaaattttgcgag 84
