miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47933_ath-miRf10833-akr:pmrd
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 8 tccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctg 60
Query: 68 agaaaagggtcccgtatggtgtcgatcgacactgga 103
||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaaagggtcccgtatggtgtcgatcgacactgga 96
>47388_ath-miRf10288-akr:pmrd
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 8 tccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctg 67
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 1 tccagtgtcgatcgacactagaggggtatcgatcgacaccgtcatattgagtcgtctctg 60
Query: 68 agaaaagggtcccgtatggtgtcgatcgacactgga 103
||||||| ||||||||||||||||||||||||||||
Sbjct: 61 agaaaagagtcccgtatggtgtcgatcgacactgga 96
>47364_ath-miRf10264-akr:pmrd
Length = 84
Score = 139 bits (70), Expect = 5e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 26 tagaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 85
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
Query: 86 gtgtcgatcgacac 99
||||||||||||||
Sbjct: 62 gtgtcgatcgacac 75
>47363_ath-miRf10263-akr:pmrd
Length = 84
Score = 139 bits (70), Expect = 5e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 26 tagaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 85
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
Query: 86 gtgtcgatcgacac 99
||||||||||||||
Sbjct: 62 gtgtcgatcgacac 75
>47920_ath-miRf10820-akr:pmrd
Length = 112
Score = 131 bits (66), Expect = 1e-31
Identities = 96/106 (90%)
Strand = Plus / Minus
Query: 1 atccagatccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtc 60
|||| |||| |||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 111 atccggatctagtgtcgatcgacactagaggggtatcgattgacaccgtcgtatttagtc 52
Query: 61 gtctctgagaaaagggtcccgtatggtgtcgatcgacactggaggg 106
||||||||||| || |||| ||||||||||||||||||| |||||
Sbjct: 51 gtctctgagaagagcatcccctatggtgtcgatcgacactagaggg 6
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 gtgtcgatcgacactagaggggtatc 37
||||||||||||||||||||||||||
Sbjct: 26 gtgtcgatcgacactagaggggtatc 1
>47629_ath-miRf10529-akr:pmrd
Length = 108
Score = 131 bits (66), Expect = 1e-31
Identities = 96/106 (90%)
Strand = Plus / Plus
Query: 1 atccagatccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtc 60
|||| |||| |||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 1 atccggatctagtgtcgatcgacactagaggggtatcgattgacaccgtcgtatttagtc 60
Query: 61 gtctctgagaaaagggtcccgtatggtgtcgatcgacactggaggg 106
||||||||||| || |||| ||||||||||||||||||| |||||
Sbjct: 61 gtctctgagaagagcatcccctatggtgtcgatcgacactagaggg 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gtgtcgatcgacactagaggggt 34
|||||||||||||||||||||||
Sbjct: 86 gtgtcgatcgacactagaggggt 108
>48212_ath-miRf11112-akr:pmrd
Length = 96
Score = 123 bits (62), Expect = 3e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 11 agtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctgaga 70
|||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 4 agtgtcgatcgacactagaggggtatcgattgacaccgtcgtatttagtcgtctctgaga 63
Query: 71 aaagggtcccgtatggtgtcgatcgacact 100
| || |||| |||||||||||||||||||
Sbjct: 64 agagcatcccctatggtgtcgatcgacact 93
>48288_ath-miRf11188-akr:pmrd
Length = 96
Score = 111 bits (56), Expect = 1e-25
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 8 tccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctg 67
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 1 tccagtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttag 60
Query: 68 agaaaagggtcccgtatggtgtcgatcgacactgga 103
| || || ||||| || |||||||||||||||||||
Sbjct: 61 aaaagagtgtcccatagggtgtcgatcgacactgga 96
>48116_ath-miRf11016-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 26 tagaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 85
||||||||||||| |||||||| ||||| || ||||||| ||||| || |||||||| |
Sbjct: 1 tagaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagg 60
Query: 86 gtgtc-gatcgacactgga 103
||||| |||||||| ||||
Sbjct: 61 gtgtcagatcgacagtgga 79
>47506_ath-miRf10406-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 26 tagaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 85
||||||||||||| |||||||| ||||| || ||||||| ||||| || |||||||| |
Sbjct: 1 tagaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagg 60
Query: 86 gtgtc-gatcgacactgga 103
||||| |||||||| ||||
Sbjct: 61 gtgtcagatcgacagtgga 79
>47190_ath-miRf10090-akr:pmrd
Length = 101
Score = 60.0 bits (30), Expect = 3e-10
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 27 agaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatgg 86
|||||||||||| |||||||| ||||| || ||||||| ||||| || |||||||| ||
Sbjct: 101 agaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtaggg 42
Query: 87 tgtc-gatcgacactgga 103
|||| |||||||| ||||
Sbjct: 41 tgtcagatcgacagtgga 24
>47836_ath-miRf10736-akr:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 28 gaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatggt 87
||||||||||| |||||||| ||||| || ||||||| ||||| || |||||||| |||
Sbjct: 99 gaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagggt 40
Query: 88 gtc-gatcgacactgga 103
||| |||||||| ||||
Sbjct: 39 gtcagatcgacagtgga 23
>47679_ath-miRf10579-akr:pmrd
Length = 83
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 40 tcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatggtgtcgatcgacac 99
||||||||||||||| || |||||| ||||| || || || || |||||||||||||||
Sbjct: 67 tcgacaccgtcgtatggaatcgtcttagagaagagtgttccatagggtgtcgatcgacac 8
Query: 100 tgga 103
||||
Sbjct: 7 tgga 4
>47431_ath-miRf10331-akr:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 17 gatcgacactagaggggtatcggtcgacaccgtcgt 52
||||||||||||||| |||||| |||||||| ||||
Sbjct: 1 gatcgacactagaggtgtatcgatcgacaccctcgt 36
>48032_ath-miRf10932-akr:pmrd
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 tccagatccagtgtcgatcgacac 25
|||||| |||||||||||||||||
Sbjct: 24 tccagacccagtgtcgatcgacac 1
