miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 101 bits (51), Expect = 8e-23
Identities = 79/89 (88%), Gaps = 7/89 (7%)
Strand = Plus / Plus
Query: 1 ctgtactcaacccacgtagtcgagtgggaggtcgagtgaatagct-------tcttttct 53
|||||||| ||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggactcttcttttct 60
Query: 54 tccttgtgctcgagtgtctggttgagtgc 82
|||||||||||||||||||||||||||||
Sbjct: 61 tccttgtgctcgagtgtctggttgagtgc 89
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 80/91 (87%), Gaps = 7/91 (7%)
Strand = Plus / Plus
Query: 1 ctgtactcaacccacgtagtcgagtgggaggtcgagtgaatagct-------tcttttct 53
|||||||| ||||| || |||||||||||||||||||||||| || ||||||||
Sbjct: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaataactggagtcttcttttct 60
Query: 54 tccttgtgctcgagtgtctggttgagtgcgg 84
|||||||||||||||||||||||||||||||
Sbjct: 61 tccttgtgctcgagtgtctggttgagtgcgg 91
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 80/91 (87%), Gaps = 7/91 (7%)
Strand = Plus / Plus
Query: 1 ctgtactcaacccacgtagtcgagtgggaggtcgagtgaatagct-------tcttttct 53
|||||||| ||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgtactcgacccatgtggtcgagtgggaggtcgagtgaatagctggagtcttcttttct 60
Query: 54 tccttgtgctcgagtgtctggttgagtgcgg 84
||||||||||||||||| |||||||||||||
Sbjct: 61 tccttgtgctcgagtgtatggttgagtgcgg 91
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 85.7 bits (43), Expect = 5e-18
Identities = 77/89 (86%), Gaps = 7/89 (7%)
Strand = Plus / Plus
Query: 1 ctgtactcaacccacgtagtcgagtgggaggtcgagtgaatagct-------tcttttct 53
|||||||| ||||| || |||||||| |||||||||||||||||| |||||||
Sbjct: 1 ctgtactcgacccaggtggtcgagtgagaggtcgagtgaatagctggagtcttcttttcc 60
Query: 54 tccttgtgctcgagtgtctggttgagtgc 82
|||||||||||||||||||||||||||||
Sbjct: 61 tccttgtgctcgagtgtctggttgagtgc 89
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 81.8 bits (41), Expect = 7e-17
Identities = 78/91 (85%), Gaps = 7/91 (7%)
Strand = Plus / Minus
Query: 1 ctgtactcaacccacgtagtcgagtgggaggtcgagtgaatagct-------tcttttct 53
|||||||| ||||| || |||||||| | |||||||||||||||| ||||||||
Sbjct: 234 ctgtactcgacccaggtggtcgagtgtgtggtcgagtgaatagctggagtcttcttttct 175
Query: 54 tccttgtgctcgagtgtctggttgagtgcgg 84
|||||||||| ||||||||||||||||||||
Sbjct: 174 tccttgtgcttgagtgtctggttgagtgcgg 144
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 81.8 bits (41), Expect = 7e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 64
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 79.8 bits (40), Expect = 3e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcg 83
||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 cttcttttcttccttgtgctcgagtgtctggttgagtgcg 61
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 140 cttcttttcttccttgtgctcgagtgtctggttaagtgcgg 100
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24 cttcttttcttccttgtgctcgagtgtctagttgagtgcgg 64
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 20 cttcttttcttccttgtgcttgagtgtctggttgagtgcgg 60
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 22 cttcttttcttccttgtgctcgagtgtatggttgagtgcgg 62
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 22 cttcttttcttccttgtgctcgagtgtctagttgagtgcgg 62
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 65.9 bits (33), Expect = 4e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 42 cttcttatcttccttgtgctcgtgtgtctggttgagtgcgg 82
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 65.9 bits (33), Expect = 4e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||| |||||||||||||||| |||||||||||||||||
Sbjct: 23 cttcttctcttccttgtgctcgattgtctggttgagtgcgg 63
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 7e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgc 82
||||| ||||||||||||||||||||||| |||||||||
Sbjct: 51 cttctattcttccttgtgctcgagtgtctagttgagtgc 89
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtg 81
|||||| |||||||||||||||| ||||||||||||||
Sbjct: 48 cttcttctcttccttgtgctcgattgtctggttgagtg 85
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||| ||||||| |||||||||||||||||||||||||
Sbjct: 51 cttcttctcttcctcatgctcgagtgtctggttgagtgcgg 91
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||| ||||||| |||||||||||||||||||||||||
Sbjct: 51 cttcttctcttcctcatgctcgagtgtctggttgagtgcgg 91
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgc 82
|||||| |||||||| ||||||||||||| |||||||||
Sbjct: 24 cttcttctcttccttatgctcgagtgtcttgttgagtgc 62
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttga 78
||||||||||||||| ||||||||||||| |||||
Sbjct: 23 cttcttttcttccttttgctcgagtgtctagttga 57
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 2e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
|||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 51 cttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
>47938_ath-miRf10838-akr:pmrd
Length = 209
Score = 46.1 bits (23), Expect = 4e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 3 gtactcaacccacgtagtcgagtgggaggtcgagtgaatagct 45
|||||| ||||| || |||||||| |||||||||||| |||||
Sbjct: 202 gtactcgacccaggtggtcgagtgagaggtcgagtgattagct 160
>47644_ath-miRf10544-akr:pmrd
Length = 250
Score = 46.1 bits (23), Expect = 4e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 3 gtactcaacccacgtagtcgagtgggaggtcgagtgaatagct 45
|||||| ||||| || |||||||| |||||||||||| |||||
Sbjct: 6 gtactcgacccaggtggtcgagtgagaggtcgagtgattagct 48
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 60 tgctcgagtgtctggttgagtgcgg 84
||||||| |||||||||||||||||
Sbjct: 78 tgctcgaatgtctggttgagtgcgg 54
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 60 tgctcgagtgtctggttgagtgcgg 84
||||||| |||||||||||||||||
Sbjct: 67 tgctcgaatgtctggttgagtgcgg 91
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 60 tgctcgagtgtctggttgagtgcgg 84
||||||| |||||||||||||||||
Sbjct: 67 tgctcgaatgtctggttgagtgcgg 91
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 60 tgctcgagtgtctggttgagtgcgg 84
||||||| |||||||||||||||||
Sbjct: 67 tgctcgaatgtctggttgagtgcgg 91
>47269_ath-miRf10169-akr:pmrd
Length = 253
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gagtgtctggttgagtgcg 83
|||||||||||||||||||
Sbjct: 5 gagtgtctggttgagtgcg 23
