miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47634_ath-miRf10534-akr:pmrd
Length = 187
Score = 359 bits (181), Expect = e-100
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 1 ggtgctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ggtgctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaa 125
Query: 61 attattgttgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 attattgttgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccat 65
Query: 121 aggacaagttgttaccaattaacccacatgagagagattagggttgatgcgctgcagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aggacaagttgttaccaattaacccacatgagagagattagggttgatgcgctgcagcgc 5
Query: 181 c 181
|
Sbjct: 4 c 4
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 gctgcagcgcatcaaccctaacctctctcatgtggg 39
||||||||||||||||||||| ||||||||||||||
Sbjct: 7 gctgcagcgcatcaaccctaatctctctcatgtggg 42
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 143 cccacatgagagagattagggttgatgcgctgcagc 178
|||||||||||||| |||||||||||||||||||||
Sbjct: 146 cccacatgagagaggttagggttgatgcgctgcagc 181
>47937_ath-miRf10837-akr:pmrd
Length = 175
Score = 347 bits (175), Expect = 2e-96
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 4 gctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaaatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaaatt 60
Query: 64 attgttgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccatagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgttgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccatagg 120
Query: 124 acaagttgttaccaattaacccacatgagagagattagggttgatgcgctgcagc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaagttgttaccaattaacccacatgagagagattagggttgatgcgctgcagc 175
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 143 cccacatgagagagattagggttgatgcgctgcagc 178
|||||||||||||| |||||||||||||||||||||
Sbjct: 36 cccacatgagagaggttagggttgatgcgctgcagc 1
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 4 gctgcagcgcatcaaccctaacctctctcatgtggg 39
||||||||||||||||||||| ||||||||||||||
Sbjct: 175 gctgcagcgcatcaaccctaatctctctcatgtggg 140
>47635_ath-miRf10535-akr:pmrd
Length = 175
Score = 347 bits (175), Expect = 2e-96
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 4 gctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaaatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaaatt 116
Query: 64 attgttgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccatagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 attgttgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccatagg 56
Query: 124 acaagttgttaccaattaacccacatgagagagattagggttgatgcgctgcagc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 acaagttgttaccaattaacccacatgagagagattagggttgatgcgctgcagc 1
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 gctgcagcgcatcaaccctaacctctctcatgtggg 39
||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gctgcagcgcatcaaccctaatctctctcatgtggg 36
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 143 cccacatgagagagattagggttgatgcgctgcagc 178
|||||||||||||| |||||||||||||||||||||
Sbjct: 140 cccacatgagagaggttagggttgatgcgctgcagc 175
>47600_ath-miRf10500-akr:pmrd
Length = 136
Score = 99.6 bits (50), Expect = 7e-22
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 4 gctgcagcgcatcaaccctaacctctctcatgtgggcccttctagcccaccatgtaaatt 63
||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||
Sbjct: 130 gctgcagcgcatcaaccctaacctctctcctgtgggcccttctggcccaccaggtaggtt 71
Query: 64 attgttgcgcttgacgtt 81
|||| |||||||| ||||
Sbjct: 70 attggtgcgcttggcgtt 53
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 143 cccacatgagagagattagggttgatgcgctgcagcgcc 181
|||||| ||||||| ||||||||||||||||||||||||
Sbjct: 95 cccacaggagagaggttagggttgatgcgctgcagcgcc 133
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 158 ttagggttgatgcgctgcagcgcc 181
||||||||||||||||||||||||
Sbjct: 27 ttagggttgatgcgctgcagcgcc 4
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gctgcagcgcatcaaccctaacct 27
||||||||||||||||||||||||
Sbjct: 7 gctgcagcgcatcaaccctaacct 30
>47167_ath-miRf10067-akr:pmrd
Length = 117
Score = 91.7 bits (46), Expect = 2e-19
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 69 tgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccataggacaag 128
|||||||| |||| ||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 116 tgcgcttggcgttcctcgaacccaagacctcaccctttaacaaccttcccacaggacaaa 57
Query: 129 ttgttaccaattaa 142
|||||||||||||
Sbjct: 56 ctgttaccaattaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 aacccaagacctcacccttta 107
|||||||||||||||||||||
Sbjct: 20 aacccaagacctcacccttta 40
>47166_ath-miRf10066-akr:pmrd
Length = 113
Score = 89.7 bits (45), Expect = 7e-19
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 70 gcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccataggacaagt 129
||||||| |||| ||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 113 gcgcttggcgttcctcgaacccaagacctcaccctttaacaaccttcccacaggacaaac 54
Query: 130 tgttaccaattaa 142
|||||||||||||
Sbjct: 53 tgttaccaattaa 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 aacccaagacctcacccttta 107
|||||||||||||||||||||
Sbjct: 18 aacccaagacctcacccttta 38
>48092_ath-miRf10992-akr:pmrd
Length = 101
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 78 cgtttctcaaacccaagacctcaccctttaacaatcttcccataggacaagttgttacca 137
|||| ||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct: 3 cgttcctcgaacccaagacctcaccctttaacaaccttcccacaggacaaactgttacca 62
Query: 138 attaa 142
|||||
Sbjct: 63 attaa 67
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 aacccaagacctcacccttta 107
|||||||||||||||||||||
Sbjct: 90 aacccaagacctcacccttta 70
>47811_ath-miRf10711-akr:pmrd
Length = 101
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 78 cgtttctcaaacccaagacctcaccctttaacaatcttcccataggacaagttgttacca 137
|||| ||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct: 99 cgttcctcgaacccaagacctcaccctttaacaaccttcccacaggacaaactgttacca 40
Query: 138 attaa 142
|||||
Sbjct: 39 attaa 35
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 aacccaagacctcacccttta 107
|||||||||||||||||||||
Sbjct: 12 aacccaagacctcacccttta 32
>47673_ath-miRf10573-akr:pmrd
Length = 104
Score = 79.8 bits (40), Expect = 7e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 69 tgcgcttgacgtttctcaaacccaagacctcaccctttaacaatcttcccataggacaag 128
|||||||| |||| ||| |||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 3 tgcgcttggcgttcctcgaacccaagacctcatcctttaacaactttcccaaaggacaag 62
Query: 129 ttgttaccaatt 140
|||||||||||
Sbjct: 63 ctgttaccaatt 74
