miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 145 bits (73), Expect = 8e-36
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 4 gttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggt 63
||||||||||||||||||||||||||||| |||||||||| || |||| ||||| ||| |
Sbjct: 109 gttggtgtcgatcgacacctctgttgtgtcgttcgacacctattgcatttgcgtgctgct 50
Query: 64 catgaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 cccgatggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 1
>47509_ath-miRf10409-akr:pmrd
Length = 112
Score = 143 bits (72), Expect = 3e-35
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 1 ggggttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttct 60
|||||||||||||||||||||||||||||||| | |||||||||||||| ||| | || |
Sbjct: 1 ggggttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattat 60
Query: 61 ggtcatgaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcccaaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 143 bits (72), Expect = 3e-35
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 4 gttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggt 63
||||||||||||||||||||||||||||| |||||||||| || |||| ||||| ||| |
Sbjct: 4 gttggtgtcgatcgacacctctgttgtgtcgttcgacacctattgcatttgcgtgctgct 63
Query: 64 catgaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagcc 111
| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cccgatggtgtcgatcgacacccagttggtgtcgctcgacaccgagcc 111
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 113 bits (57), Expect = 3e-26
Identities = 96/109 (88%)
Strand = Plus / Plus
Query: 4 gttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggt 63
||||||||||||||||||||||||||||| |||||||||| || | ||||| || ||| |
Sbjct: 6 gttggtgtcgatcgacacctctgttgtgtcgttcgacaccgattgtatctgtgtgctgct 65
Query: 64 catgaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
| || |||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 66 ctcgatggtgtcgatcaacacccagttggtgtcggtcgacaccaagccc 114
>47267_ath-miRf10167-akr:pmrd
Length = 111
Score = 85.7 bits (43), Expect = 6e-18
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 3 ggttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctgg 62
|||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||
Sbjct: 110 ggttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaa 51
Query: 63 tcatgaaggtgtcgatcgacacc 85
|| ||||||||||||| |||||
Sbjct: 50 tcccgaaggtgtcgatctacacc 28
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 16 cgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggtcatgaaggtgtc 75
||||||||||||| ||| |||||||||| ||| | || ||| ||| |||||| ||||||
Sbjct: 82 cgacacctctgttatgtcgttcgacaccgatcacttccgcgcgctgctcatgatggtgtc 23
Query: 76 gatcgacacccagttggtgtcg 97
||||||||||||||||||||||
Sbjct: 22 gatcgacacccagttggtgtcg 1
>47934_ath-miRf10834-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 4 gttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggt 63
||||||||||||||||||||||||||||| |||||||||| || ||||| || | ||| |
Sbjct: 4 gttggtgtcgatcgacacctctgttgtgtcgttcgacaccgattgcatccgcatgctgct 63
Query: 64 catgaaggtgtcgatcgacacc 85
| || ||||||||||||||||
Sbjct: 64 cccgatggtgtcgatcgacacc 85
>47692_ath-miRf10592-akr:pmrd
Length = 65
Score = 83.8 bits (42), Expect = 2e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 67 gaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 14 gaaggtgtcgatcgacacctagttggtgtcgctcgacaccgagccc 59
>47360_ath-miRf10260-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 4 gttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggt 63
||||||||||||||||||||||||||||| ||| | ||| || ||||| |||||||| |
Sbjct: 88 gttggtgtcgatcgacacctctgttgtgtcattcaataccgattgcatccgcgttctgct 29
Query: 64 catgaaggtgtcgatcgacacc 85
| |||||||||||||||||||
Sbjct: 28 cccgaaggtgtcgatcgacacc 7
>48181_ath-miRf11081-akr:pmrd
Length = 104
Score = 81.8 bits (41), Expect = 1e-16
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 5 ttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggtc 64
|||||||||||||||||||||||||||| ||||||||||||||| ||| | |||| ||
Sbjct: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatc 60
Query: 65 atgaaggtgtcgatcgacacc 85
||||||||||||| |||||
Sbjct: 61 ccgaaggtgtcgatctacacc 81
>48073_ath-miRf10973-akr:pmrd
Length = 84
Score = 61.9 bits (31), Expect = 9e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 15 tcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggtcatgaaggtgt 74
|||||||||||||||||| | |||||||||||||| || ||| ||| || || |||||
Sbjct: 1 tcgacacctctgttgtgtcggtcgacaccaatcgcgtcgtcgtgctgctcccgatggtgt 60
Query: 75 cgatcgacacc 85
|||||||||||
Sbjct: 61 cgatcgacacc 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tggtgtcgatcgacacctctgttgtgt 32
|||||||||||||||||||||||||||
Sbjct: 55 tggtgtcgatcgacacctctgttgtgt 81
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
||||||||||||||||| |||||||||| |||||||
Sbjct: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
||||||||||||||||||| | |||||| |||||||
Sbjct: 66 ggtgtcgatcgacacccagct-gtgtcggtcgacac 100
>47826_ath-miRf10726-akr:pmrd
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 71 gtgtcgatcgacacccagttggtgtcgctcgacacc 106
|||||||||||||||| |||||||||| || |||||
Sbjct: 67 gtgtcgatcgacaccctgttggtgtcgttcaacacc 32
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 63 tcatgaaggtgtcgatcgacaccca 87
|||||| ||||||||||||||||||
Sbjct: 40 tcatgatggtgtcgatcgacaccca 16
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 63 tcatgaaggtgtcgatcgacaccca 87
|||||| ||||||||||||||||||
Sbjct: 103 tcatgatggtgtcgatcgacaccca 127
>48068_ath-miRf10968-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gggttggtgtcgatcgacac 21
||||||||||||||||||||
Sbjct: 6 gggttggtgtcgatcgacac 25
>47704_ath-miRf10604-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggtgtcgatcgacacccagt 89
||||||||||||||||||||
Sbjct: 59 ggtgtcgatcgacacccagt 78
>47455_ath-miRf10355-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gggttggtgtcgatcgacac 21
||||||||||||||||||||
Sbjct: 11 gggttggtgtcgatcgacac 30
>47454_ath-miRf10354-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gggttggtgtcgatcgacac 21
||||||||||||||||||||
Sbjct: 11 gggttggtgtcgatcgacac 30
>47088_ath-miR855:pmrd
Length = 272
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 71 gtgtcgatcgacacccagttggtgtcgctcgacacc 106
|||||||||||||| | ||||||||| ||||||||
Sbjct: 64 gtgtcgatcgacacactcttggtgtcgatcgacacc 99
