miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40043_ath-MIR168a:mirbase
          Length = 138

 Score =  256 bits (129), Expect = 3e-69
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 65

                                                                       
Query: 61  ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 125

                    
Query: 121 gatcctcga 129
           |||||||||
Sbjct: 126 gatcctcga 134




>39832_aly-MIR168a:mirbase
          Length = 155

 Score =  240 bits (121), Expect = 2e-64
 Identities = 124/125 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12  tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 71

                                                                       
Query: 61  ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tttaaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 131

                
Query: 121 gatcc 125
           |||||
Sbjct: 132 gatcc 136




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 90/107 (84%), Gaps = 5/107 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 72
           ||||||||||||||||||||||  ||| ||||||||| ||| |||| ||||    || | 
Sbjct: 18  tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72

                                                          
Query: 73  attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 119
            |||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 73  gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119




>41348_ptc-MIR168b:mirbase
          Length = 136

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  attggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||||||
Sbjct: 103 attggatcccgccttgcatcaactgaatcgga 134



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 attcgcttggtgcaggtcgggaaccaattcggc 43
          ||||||||||||||||||||||||  |||||||
Sbjct: 9  attcgcttggtgcaggtcgggaactgattcggc 41




>41347_ptc-MIR168a:mirbase
          Length = 160

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  attggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||||||
Sbjct: 127 attggatcccgccttgcatcaactgaatcgga 158



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 gattcgcttggtgcaggtcgggaaccaattcggc 43
          |||||||||||||||||||||||||  |||||||
Sbjct: 8  gattcgcttggtgcaggtcgggaactgattcggc 41




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  attggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||||||
Sbjct: 136 attggatcccgccttgcatcaactgaatcgga 167



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 attcgcttggtgcaggtcgggaac 34
          ||||||||||||||||||||||||
Sbjct: 19 attcgcttggtgcaggtcgggaac 42




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  attggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcgga 166



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 attcgcttggtgcaggtcgggaac 34
          ||||||||||||||||||||||||
Sbjct: 18 attcgcttggtgcaggtcgggaac 41




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  attggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||||||
Sbjct: 120 attggatcccgccttgcatcaactgaatcgga 151



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 attcgcttggtgcaggtcgggaac 34
          ||||||||||||||||||||||||
Sbjct: 19 attcgcttggtgcaggtcgggaac 42




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  attggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||||||
Sbjct: 81  attggatcccgccttgcatcaactgaatcgga 112



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 attcgcttggtgcaggtcgggaacc 35
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 91  attggatcccgccttgcatcaactgaatcg 120
           ||||||||||||||||||||||||||||||
Sbjct: 99  attggatcccgccttgcatcaactgaatcg 128



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 attcgcttggtgcaggtcgggaac 34
          ||||||||||||||||||||||||
Sbjct: 4  attcgcttggtgcaggtcgggaac 27




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 6  ctcggattcgcttggtgcaggtcgggaac 34
          |||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 6  ctcggattcgcttggtgcaggtcgggaac 34
          |||||||||||||||||||||||||||||
Sbjct: 36 ctcggattcgcttggtgcaggtcgggaac 64



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 95  gatcccgccttgcatcaactgaatcgga 122
           ||||||| |||| |||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcgga 137




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 95  gatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcgga 126



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 attcgcttggtgcaggtcgggaacc 35
          |||||||||||||||||||||||||
Sbjct: 9  attcgcttggtgcaggtcgggaacc 33




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||||||| |||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcgga 91




>42741_zma-MIR168a:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcgga 91




>42470_ssp-MIR168a:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 60  ggatcccgccttgcaccaagtgaatcgga 88




>42460_sof-MIR168b:mirbase
          Length = 103

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcgga 90




>42459_sof-MIR168a:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcgga 91




>41962_osa-MIR168a:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcgga 83




>41961_osa-MIR168a:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcgga 83




>41888_hvu-MIR168:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcgga 94




>41887_hvu-MIR168:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcgga 94




>41753_bdi-MIR168:mirbase
          Length = 136

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcccgccttgcatcaactgaatcgga 122
           ||||||||||||||| ||| |||||||||
Sbjct: 75  ggatcccgccttgcaccaagtgaatcgga 103