miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47610_ath-miRf10510-akr:pmrd
Length = 132
Score = 222 bits (112), Expect = 5e-59
Identities = 124/128 (96%)
Strand = Plus / Plus
Query: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagccg 60
Query: 61 ttatcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaaga 120
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 ttatcgttggtttaaggacaaaaacagttgttagttacgctgttaggagagctgttaaga 120
Query: 121 agttttaa 128
||| ||||
Sbjct: 121 agtgttaa 128
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagttttaacggt 132
||||||||||| ||||||||| ||| ||||||||
Sbjct: 34 gctgttaggagcgctgttaaggagtgttaacggt 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 ttaacactccttaacagcgctcctaacagc 34
|||||||| ||||||||| |||||||||||
Sbjct: 128 ttaacacttcttaacagctctcctaacagc 99
>47154_ath-miRf10054-akr:pmrd
Length = 126
Score = 218 bits (110), Expect = 8e-58
Identities = 122/126 (96%)
Strand = Plus / Plus
Query: 4 gttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctgtta 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 1 gttaacactccttaacagcgctcctaacagcccttacaaaacatggcctaacagccgtta 60
Query: 64 tcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaagaagt 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 tcgttggtttaaggacgaaaacagttgttagttacgctgttaggagagctgttaagaagt 120
Query: 124 tttaac 129
|||||
Sbjct: 121 gttaac 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 4 gttaacactccttaacagcgctcctaacagc 34
||||||||| ||||||||| |||||||||||
Sbjct: 126 gttaacacttcttaacagctctcctaacagc 96
>47728_ath-miRf10628-akr:pmrd
Length = 132
Score = 214 bits (108), Expect = 1e-56
Identities = 123/128 (96%)
Strand = Plus / Plus
Query: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagccg 60
Query: 61 ttatcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaaga 120
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 ttattgttggtttaaggacaaaaacagttgttagttacgctgttaggagagctgttaaga 120
Query: 121 agttttaa 128
||| ||||
Sbjct: 121 agtgttaa 128
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagttttaacggt 132
||||||||||| ||||||||| ||| ||||||||
Sbjct: 34 gctgttaggagcgctgttaaggagtgttaacggt 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 ttaacactccttaacagcgctcctaacagc 34
|||||||| ||||||||| |||||||||||
Sbjct: 128 ttaacacttcttaacagctctcctaacagc 99
>47474_ath-miRf10374-akr:pmrd
Length = 176
Score = 206 bits (104), Expect = 3e-54
Identities = 122/128 (95%)
Strand = Plus / Minus
Query: 5 ttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctgttat 64
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 150 ttaacactccttaacagcgctcctaacagccgttacaaaacgtggcctaacaatcgttat 91
Query: 65 cgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaagaagtt 124
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 90 cgttggtttaaggacgaaaacagttgttagttacgctgttaggagagctgttaagaagtg 31
Query: 125 ttaacggt 132
||||||||
Sbjct: 30 ttaacggt 23
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 accgttaacactccttaacagcgctcctaacagc 34
|||||||||||| ||||||||| |||||||||||
Sbjct: 23 accgttaacacttcttaacagctctcctaacagc 56
>47162_ath-miRf10062-akr:pmrd
Length = 132
Score = 206 bits (104), Expect = 3e-54
Identities = 122/128 (95%)
Strand = Plus / Plus
Query: 5 ttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctgttat 64
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 5 ttaacactccttaacagcgctcctaacagccgttacaaaacgtggcctaacaatcgttat 64
Query: 65 cgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaagaagtt 124
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 65 cgttggtttaaggacgaaaacagttgttagttacgctgttaggagagctgttaagaagtg 124
Query: 125 ttaacggt 132
||||||||
Sbjct: 125 ttaacggt 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 accgttaacactccttaacagcgctcctaacagc 34
|||||||||||| ||||||||| |||||||||||
Sbjct: 132 accgttaacacttcttaacagctctcctaacagc 99
>47478_ath-miRf10378-akr:pmrd
Length = 132
Score = 198 bits (100), Expect = 7e-52
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctg 60
|||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1 accgttaacacttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
Query: 61 ttatcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaaga 120
|| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
Query: 121 agttttaacggt 132
||| ||||||||
Sbjct: 121 agtgttaacggt 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 accgttaacactccttaacagcgctcctaacagc 34
|||||||||||| ||||||||| |||||||||||
Sbjct: 132 accgttaacacttcttaacagctctcctaacagc 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagttttaacggt 132
||||||||||| ||| ||||||||| ||||||||
Sbjct: 34 gctgttaggagcgctattaagaagtgttaacggt 1
>48091_ath-miRf10991-akr:pmrd
Length = 128
Score = 190 bits (96), Expect = 2e-49
Identities = 120/128 (93%)
Strand = Plus / Plus
Query: 3 cgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctgtt 62
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 1 cgttaacacttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgtt 60
Query: 63 atcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaagaag 122
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 61 gtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaag 120
Query: 123 ttttaacg 130
| ||||||
Sbjct: 121 tgttaacg 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 3 cgttaacactccttaacagcgctcctaacagc 34
|||||||||| ||||||||| |||||||||||
Sbjct: 128 cgttaacacttcttaacagctctcctaacagc 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 99 gctgttaggagagctgttaagaagttttaacg 130
||||||||||| ||| ||||||||| ||||||
Sbjct: 32 gctgttaggagcgctattaagaagtgttaacg 1
>47419_ath-miRf10319-akr:pmrd
Length = 132
Score = 190 bits (96), Expect = 2e-49
Identities = 123/132 (93%)
Strand = Plus / Plus
Query: 1 accgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctg 60
|||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1 accgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccg 60
Query: 61 ttatcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaaga 120
|| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 61 ttgtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaaga 120
Query: 121 agttttaacggt 132
||| ||||||||
Sbjct: 121 agtgttaacggt 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 accgttaacactccttaacagcgctcctaacagc 34
|||||||||||| ||||||||| |||||||||||
Sbjct: 132 accgttaacacttcttaacagctctcctaacagc 99
>48018_ath-miRf10918-akr:pmrd
Length = 128
Score = 182 bits (92), Expect = 4e-47
Identities = 119/128 (92%)
Strand = Plus / Plus
Query: 3 cgttaacactccttaacagcgctcctaacagccgttacaaaacatggcctaacagctgtt 62
|||||||| | ||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 1 cgttaacatttcttaatagcgctcctaacagccattacaaaacatggcctaacagccgtt 60
Query: 63 atcgttggtttaaggacgaaaacagttgttagttatgctgttaggagagctgttaagaag 122
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 61 gtcgttggtttaaggacgaaaacaattgttagttacgctgttaggagagctgttaagaag 120
Query: 123 ttttaacg 130
| ||||||
Sbjct: 121 tgttaacg 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 3 cgttaacactccttaacagcgctcctaacagc 34
|||||||||| ||||||||| |||||||||||
Sbjct: 128 cgttaacacttcttaacagctctcctaacagc 97
