miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46941_ath-miR164b:pmrd
          Length = 153

 Score =  226 bits (114), Expect = 4e-60
 Identities = 140/153 (91%)
 Strand = Plus / Plus

                                                                       
Query: 4   gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatgcgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatgcgt 60

                                                                       
Query: 64  gtatatatgcggaattttgtgatatagannnnnnnnnnnnntgagtgtgatgatatggat 123
           ||||||||||||||||||||||||||||             |||||||||||||||||||
Sbjct: 61  gtatatatgcggaattttgtgatatagatgtgtgtgtgtgttgagtgtgatgatatggat 120

                                            
Query: 124 gagttagttcttcatgtgcccatcttcaccatc 156
           |||||||||||||||||||||||||||||||||
Sbjct: 121 gagttagttcttcatgtgcccatcttcaccatc 153




>54787_vvi-miR164c:pmrd
          Length = 97

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 6  caagatggagaagcagggcacgtgcattactagctcat 43




>53142_ptc-miRf11320-akr:pmrd
          Length = 167

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          |||||||||||||||||||||||||||||||| |||||
Sbjct: 10 caagatggagaagcagggcacgtgcattactaactcat 47



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 124 gagttagttcttcatgtgcccatcttcaccatcatg 159
           ||||||||||||||||||||  ||||| ||||||||
Sbjct: 121 gagttagttcttcatgtgcctgtcttccccatcatg 156




>51623_ptc-miR164e:pmrd
          Length = 155

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          |||||||||||||||||||||||||||||||| |||||
Sbjct: 6  caagatggagaagcagggcacgtgcattactaactcat 43



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 124 gagttagttcttcatgtgcccatcttcaccatcatg 159
           ||||||||||||||||||||  ||||| ||||||||
Sbjct: 117 gagttagttcttcatgtgcctgtcttccccatcatg 152




>51348_ppl-miR164:pmrd
          Length = 159

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          |||||||||||||||||||||||||||||||| |||||
Sbjct: 6  caagatggagaagcagggcacgtgcattactaactcat 43



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 123 tgagttagttcttcatgtgcccatcttcaccatcatg 159
           |||||||||||||||||||||  ||||| ||||||||
Sbjct: 116 tgagttagttcttcatgtgcctgtcttccccatcatg 152




>52901_ptc-miRf11079-akr:pmrd
          Length = 171

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          |||||||||||||||||||||||||| ||||| |||||
Sbjct: 10 caagatggagaagcagggcacgtgcactactaactcat 47




>51620_ptc-miR164b:pmrd
          Length = 162

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          |||||||||||||||||||||||||| ||||| |||||
Sbjct: 6  caagatggagaagcagggcacgtgcactactaactcat 43




>48709_mtr-miR164b:pmrd
          Length = 144

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  caagatggagaagcagggcacgtgcattactagctcat 38
          |||||||||||||||||||||||||| ||||| |||||
Sbjct: 1  caagatggagaagcagggcacgtgcaatactaactcat 38



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 123 tgagttagttcttcatgtgcccatcttcaccatcatg 159
           |||||||||||||||||||||| ||||| ||||||||
Sbjct: 107 tgagttagttcttcatgtgcccctcttccccatcatg 143




>48473_csi-miR164:pmrd
          Length = 168

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 6  tggagaagcagggcacgtgcattactagctca 37
          ||||||||||||||||||||||||||| ||||
Sbjct: 1  tggagaagcagggcacgtgcattactaactca 32



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 123 tgagttagttcttcatgtgcccatcttc 150
           ||||||| |||||||||||||| |||||
Sbjct: 137 tgagttatttcttcatgtgcccttcttc 164




>54956_zma-miR164h:pmrd
          Length = 96

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  tggagaagcagggcacgtgcattac 30
          |||||||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgcattac 28




>54950_zma-miR164b:pmrd
          Length = 128

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  tggagaagcagggcacgtgcattac 30
          |||||||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgcattac 45




>54410_sbi-miR164:pmrd
          Length = 126

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  tggagaagcagggcacgtgcattac 30
          |||||||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgcattac 25



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 130 gttcttcatgtgcccatcttc 150
           |||||||||||||||||||||
Sbjct: 102 gttcttcatgtgcccatcttc 122




>48839_osa-miR164b:pmrd
          Length = 109

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 6  tggagaagcagggcacgtgcattac 30
          |||||||||||||||||||||||||
Sbjct: 9  tggagaagcagggcacgtgcattac 33




>48843_osa-miR164f:pmrd
          Length = 210

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  tggagaagcagggcacgtgcattactag 33
          ||||||||||||||||||||||| ||||
Sbjct: 24 tggagaagcagggcacgtgcattcctag 51




>54953_zma-miR164e:pmrd
          Length = 242

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tggagaagcagggcacgtgcatt 28
          |||||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgcatt 26




>54951_zma-miR164c:pmrd
          Length = 270

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  tggagaagcagggcacgtgcatt 28
          |||||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgcatt 40




>54788_vvi-miR164d:pmrd
          Length = 118

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 4  gatggagaagcagggcacgtgca 26
          |||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgca 31




>54955_zma-miR164g:pmrd
          Length = 116

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgcat 22




>54954_zma-miR164f:pmrd
          Length = 177

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgcat 22




>54952_zma-miR164d:pmrd
          Length = 216

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 20 tggagaagcagggcacgtgcat 41




>54949_zma-miR164a:pmrd
          Length = 152

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgcat 40




>54676_tae-miR164b:pmrd
          Length = 152

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgcat 22




>54413_sbi-miR164d:pmrd
          Length = 160

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgcat 22




>50414_osa-miRf11199-akr:pmrd
          Length = 146

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgcat 34




>48838_osa-miR164a:pmrd
          Length = 156

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  tggagaagcagggcacgtgcat 27
          ||||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgcat 38




>46942_ath-miR164c:pmrd
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  gatggagaagcagggcacgtgc 25
          ||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgc 30




>54785_vvi-miR164a:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>54414_sbi-miR164e:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>51862_ptc-miRf10040-akr:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 77 tggagaagcagggcacgtgca 57




>51622_ptc-miR164d:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51621_ptc-miR164c:pmrd
          Length = 82

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51619_ptc-miR164a:pmrd
          Length = 85

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>48710_mtr-miR164c:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>48708_mtr-miR164a:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>48547_gma-miR164:pmrd
          Length = 95

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>48419_cav-miR164:pmrd
          Length = 95

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>48398_bra-miR164a:pmrd
          Length = 92

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgca 30




>48341_bna-miR164:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 7  tggagaagcagggcacgtgca 27




>47540_ath-miRf10440-akr:pmrd
          Length = 113

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgca 75




>47539_ath-miRf10439-akr:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgca 76




>46940_ath-miR164a:pmrd
          Length = 113

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 6  tggagaagcagggcacgtgca 26
          |||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39




>54411_sbi-miR164b:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  tggagaagcagggcacgtgc 25
          ||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgc 40




>48841_osa-miR164d:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  tggagaagcagggcacgtgc 25
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30